Gene annotation
Transcriptome id Sobic.005G026400.4,Sobic.005G026400.6,Sobic.005G026400.8,Sobic.005G026400.5,Sobic.005G026400.7
Synonym Sb05g002210
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1Z5RGC7
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF769
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52620 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g04295.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033422
Brachypodium PNT65512
Barley HORVU5Hr1G044360.11 , HORVU5Hr1G044360.8 , HORVU5Hr1G044360.9 , HORVU5Hr1G044360.6 , HORVU5Hr1G044360.7 , HORVU5Hr1G044360.4 , HORVU5Hr1G044360.5 , HORVU5Hr1G044360.2 , HORVU5Hr1G044360.3 , HORVU5Hr1G044360.1 , HORVU5Hr1G044360.14 , HORVU5Hr1G044360.10 , HORVU5Hr1G044360.12 , HORVU5Hr1G044360.13
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
2 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
3 Sobic.004G224600 expressed protein -
4 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
5 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
6 Sobic.002G356200 GCN5-related N-acetyltransferase, putative, expressed K14682: amino-acid N-acetyltransferase
7 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
8 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
9 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
10 Sobic.001G521750 - -
11 Sobic.001G393900 FAD binding domain containing protein, expressed -
12 Sobic.006G125500 expressed protein -
13 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
15 Sobic.002G171300 - -
16 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
17 Sobic.001G466500 PPR repeat containing protein, expressed -
18 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
19 Sobic.009G254100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
20 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4


Gene co-expression network
sample Sobic005G026400 Sobic005G026400 Sobic002G398700 Sobic002G398700 Sobic005G026400--Sobic002G398700 Sobic003G146600 Sobic003G146600 Sobic005G026400--Sobic003G146600 Sobic004G224600 Sobic004G224600 Sobic005G026400--Sobic004G224600 Sobic002G235200 Sobic002G235200 Sobic005G026400--Sobic002G235200 Sobic003G308500 Sobic003G308500 Sobic005G026400--Sobic003G308500 Sobic002G356200 Sobic002G356200 Sobic005G026400--Sobic002G356200 Sobic003G012000 Sobic003G012000 Sobic005G026400--Sobic003G012000 Sobic003G143800 Sobic003G143800 Sobic005G026400--Sobic003G143800 Sobic001G015400 Sobic001G015400 Sobic005G026400--Sobic001G015400 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic006G106300 Sobic006G106300 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic003G146600--Sobic003G308500 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic003G146600--Sobic002G235200 Sobic001G145400 Sobic001G145400 Sobic003G146600--Sobic001G145400 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G146600--Sobic003G012000 Sobic004G224600--Sobic006G002800 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic002G235200--Sobic006G086600 Sobic001G089600 Sobic001G089600 Sobic002G235200--Sobic001G089600 Sobic002G235200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic002G235200--Sobic010G059500 Sobic002G235200--Sobic003G146600 Sobic006G166200 Sobic006G166200 Sobic002G235200--Sobic006G166200 Sobic003G036400 Sobic003G036400 Sobic002G235200--Sobic003G036400 Sobic004G320500 Sobic004G320500 Sobic002G235200--Sobic004G320500 Sobic002G235200--Sobic004G224600 Sobic003G308500--Sobic003G146600 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G308500--Sobic003G012000 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic002G356200--Sobic005G026400 Sobic009G192300 Sobic009G192300 Sobic002G356200--Sobic009G192300 Sobic006G234700 Sobic006G234700 Sobic002G356200--Sobic006G234700 Sobic001G340300 Sobic001G340300 Sobic002G356200--Sobic001G340300 Sobic009G251200 Sobic009G251200 Sobic002G356200--Sobic009G251200 Sobic009G194000 Sobic009G194000 Sobic002G356200--Sobic009G194000 Sobic006G155100 Sobic006G155100 Sobic002G356200--Sobic006G155100 Sobic002G356200--Sobic003G012000 Sobic002G292800 Sobic002G292800 Sobic002G356200--Sobic002G292800 Sobic003G012000--Sobic010G059500 Sobic003G012000--Sobic003G308500 Sobic001G393900 Sobic001G393900 Sobic003G012000--Sobic001G393900 Sobic003G012000--Sobic003G146600 Sobic004G096400 Sobic004G096400 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G043000 Sobic003G043000 Sobic003G012000--Sobic003G043000 Sobic003G012000--Sobic006G234700 Sobic003G256800 Sobic003G256800 Sobic003G012000--Sobic003G256800 Sobic008G124800 Sobic008G124800 Sobic003G143800--Sobic008G124800 Sobic006G021700 Sobic006G021700 Sobic003G143800--Sobic006G021700 Sobic003G143800--Sobic001G015400 Sobic007G155500 Sobic007G155500 Sobic003G143800--Sobic007G155500 Sobic008G092800 Sobic008G092800 Sobic003G143800--Sobic008G092800 Sobic002G340900 Sobic002G340900 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic005G114500 Sobic005G114500 Sobic003G143800--Sobic005G114500 Sobic003G405500 Sobic003G405500 Sobic003G143800--Sobic003G405500 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic001G015400--Sobic006G021700 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic001G015400--Sobic006G106300
Octagon: transcription factors


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