Gene annotation
Transcriptome id Sobic.001G466500.4,Sobic.001G466500.1
Synonym Sb01g043770
Functional annotation PPR repeat containing protein, expressed
UniProt C5WTT9
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF871
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G16880 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g10420.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a001164
Brachypodium PNT77965
Barley HORVU4Hr1G070310.9 , HORVU4Hr1G070310.8 , HORVU4Hr1G070310.5 , HORVU4Hr1G070310.4 , HORVU4Hr1G070310.7 , HORVU4Hr1G070310.6 , HORVU4Hr1G070310.1 , HORVU4Hr1G070310.3 , HORVU4Hr1G070310.2
Wheat TraesCS4A02G045400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
2 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
4 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G092050 - -
6 Sobic.002G155000 EMB1381, putative, expressed -
7 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
8 Sobic.003G218200 pentatricopeptide containing protein, putative, expressed -
9 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
10 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
11 Sobic.002G317100 PPR repeat containing protein, expressed -
12 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
13 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
14 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
15 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
16 Sobic.006G128400 PPR repeat containing protein, expressed -
17 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
18 Sobic.004G356200 expressed protein -
19 Sobic.003G222000 metallo-beta-lactamase, putative, expressed K13148: CPSF3L, integrator complex subunit 11
20 Sobic.002G011100 expressed protein -


Gene co-expression network
sample Sobic001G466500 Sobic001G466500 Sobic002G398700 Sobic002G398700 Sobic001G466500--Sobic002G398700 Sobic005G026400 Sobic005G026400 Sobic001G466500--Sobic005G026400 Sobic010G091400 Sobic010G091400 Sobic001G466500--Sobic010G091400 Sobic002G364900 Sobic002G364900 Sobic001G466500--Sobic002G364900 Sobic002G092050 Sobic002G092050 Sobic001G466500--Sobic002G092050 Sobic002G155000 Sobic002G155000 Sobic001G466500--Sobic002G155000 Sobic006G193300 Sobic006G193300 Sobic001G466500--Sobic006G193300 Sobic003G218200 Sobic003G218200 Sobic001G466500--Sobic003G218200 Sobic002G386600 Sobic002G386600 Sobic001G466500--Sobic002G386600 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic006G106300 Sobic006G106300 Sobic002G398700--Sobic006G106300 Sobic002G398700--Sobic010G091400 Sobic001G015400 Sobic001G015400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G398700--Sobic002G386600 Sobic002G398700--Sobic002G364900 Sobic005G026400--Sobic002G398700 Sobic003G146600 Sobic003G146600 Sobic005G026400--Sobic003G146600 Sobic004G224600 Sobic004G224600 Sobic005G026400--Sobic004G224600 Sobic002G235200 Sobic002G235200 Sobic005G026400--Sobic002G235200 Sobic003G308500 Sobic003G308500 Sobic005G026400--Sobic003G308500 Sobic002G356200 Sobic002G356200 Sobic005G026400--Sobic002G356200 Sobic003G012000 Sobic003G012000 Sobic005G026400--Sobic003G012000 Sobic003G143800 Sobic003G143800 Sobic005G026400--Sobic003G143800 Sobic005G026400--Sobic001G015400 Sobic010G091400--Sobic002G398700 Sobic010G091400--Sobic003G218200 Sobic009G194000 Sobic009G194000 Sobic010G091400--Sobic009G194000 Sobic003G021600 Sobic003G021600 Sobic010G091400--Sobic003G021600 Sobic008G037700 Sobic008G037700 Sobic010G091400--Sobic008G037700 Sobic003G297700 Sobic003G297700 Sobic010G091400--Sobic003G297700 Sobic002G252400 Sobic002G252400 Sobic010G091400--Sobic002G252400 Sobic010G091400--Sobic002G356200 Sobic003G181700 Sobic003G181700 Sobic010G091400--Sobic003G181700 Sobic002G364900--Sobic003G304400 Sobic010G192600 Sobic010G192600 Sobic002G364900--Sobic010G192600 Sobic006G265600 Sobic006G265600 Sobic002G364900--Sobic006G265600 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic002G364900--Sobic006G106300 Sobic001G099900 Sobic001G099900 Sobic002G364900--Sobic001G099900 Sobic001G085800 Sobic001G085800 Sobic002G364900--Sobic001G085800 Sobic001G474400 Sobic001G474400 Sobic002G364900--Sobic001G474400 Sobic002G378100 Sobic002G378100 Sobic002G092050--Sobic002G378100 Sobic006G128400 Sobic006G128400 Sobic002G092050--Sobic006G128400 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic006G125900 Sobic006G125900 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic001G501400 Sobic001G501400 Sobic002G092050--Sobic001G501400 Sobic002G238000 Sobic002G238000 Sobic002G092050--Sobic002G238000 Sobic007G075800 Sobic007G075800 Sobic002G155000--Sobic007G075800 Sobic002G031700 Sobic002G031700 Sobic002G155000--Sobic002G031700 Sobic002G155000--Sobic006G128400 Sobic002G317100 Sobic002G317100 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic003G218200--Sobic010G091400 Sobic004G097900 Sobic004G097900 Sobic003G218200--Sobic004G097900 Sobic003G218200--Sobic002G364900 Sobic003G218200--Sobic003G297700 Sobic002G386900 Sobic002G386900 Sobic003G218200--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic003G218200--Sobic006G191200 Sobic003G218200--Sobic001G466500 Sobic003G218200--Sobic002G386600 Sobic003G218200--Sobic002G398700 Sobic002G386600--Sobic002G386900 Sobic006G029100 Sobic006G029100 Sobic002G386600--Sobic006G029100 Sobic004G141800 Sobic004G141800 Sobic002G386600--Sobic004G141800 Sobic002G386600--Sobic006G265600 Sobic002G386600--Sobic002G398700 Sobic002G160700 Sobic002G160700 Sobic002G386600--Sobic002G160700 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000
Octagon: transcription factors


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