Gene annotation
Transcriptome id Sobic.002G364900.1
Synonym Sb02g038410
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XD95
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF813
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26460 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g40800.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015102 , Zm00025a048664
Brachypodium KQK15397
Barley -
Wheat TraesCS2A02G179783 , TraesCS2B02G207000 , TraesCS2D02G188400
Populus -


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cDNA sequences
Sobic.002G364900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
2 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
3 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
4 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
5 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
6 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
7 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
8 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
9 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
10 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
11 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
12 Sobic.002G119600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
13 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
14 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
15 Sobic.002G408900 adenyl cyclase, putative, expressed -
16 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
17 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
18 Sobic.001G276200 ACI13, putative, expressed -
19 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
20 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3


Gene co-expression network
sample Sobic002G364900 Sobic002G364900 Sobic003G304400 Sobic003G304400 Sobic002G364900--Sobic003G304400 Sobic010G192600 Sobic010G192600 Sobic002G364900--Sobic010G192600 Sobic006G265600 Sobic006G265600 Sobic002G364900--Sobic006G265600 Sobic001G015400 Sobic001G015400 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic006G106300 Sobic006G106300 Sobic002G364900--Sobic006G106300 Sobic001G099900 Sobic001G099900 Sobic002G364900--Sobic001G099900 Sobic001G085800 Sobic001G085800 Sobic002G364900--Sobic001G085800 Sobic001G474400 Sobic001G474400 Sobic002G364900--Sobic001G474400 Sobic003G304400--Sobic002G364900 Sobic003G397900 Sobic003G397900 Sobic003G304400--Sobic003G397900 Sobic002G398700 Sobic002G398700 Sobic003G304400--Sobic002G398700 Sobic003G304400--Sobic001G474400 Sobic002G150700 Sobic002G150700 Sobic003G304400--Sobic002G150700 Sobic003G304400--Sobic010G192600 Sobic003G202100 Sobic003G202100 Sobic003G304400--Sobic003G202100 Sobic003G304400--Sobic001G015400 Sobic003G304400--Sobic006G265600 Sobic001G097900 Sobic001G097900 Sobic010G192600--Sobic001G097900 Sobic010G192600--Sobic001G474400 Sobic001G358500 Sobic001G358500 Sobic010G192600--Sobic001G358500 Sobic007G118500 Sobic007G118500 Sobic010G192600--Sobic007G118500 Sobic008G085700 Sobic008G085700 Sobic010G192600--Sobic008G085700 Sobic005G110499 Sobic005G110499 Sobic010G192600--Sobic005G110499 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic010G192600--Sobic003G304400 Sobic006G265600--Sobic003G397900 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic006G265600--Sobic002G364900 Sobic001G015400--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic001G015400--Sobic006G106300 Sobic001G308400 Sobic001G308400 Sobic002G227500--Sobic001G308400 Sobic003G021600 Sobic003G021600 Sobic002G227500--Sobic003G021600 Sobic001G156900 Sobic001G156900 Sobic002G227500--Sobic001G156900 Sobic010G169900 Sobic010G169900 Sobic002G227500--Sobic010G169900 Sobic004G265500 Sobic004G265500 Sobic002G227500--Sobic004G265500 Sobic003G043000 Sobic003G043000 Sobic002G227500--Sobic003G043000 Sobic003G405500 Sobic003G405500 Sobic002G227500--Sobic003G405500 Sobic003G181700 Sobic003G181700 Sobic002G227500--Sobic003G181700 Sobic010G059500 Sobic010G059500 Sobic002G227500--Sobic010G059500 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic006G106300--Sobic003G021600 Sobic006G106300--Sobic002G398700 Sobic006G106300--Sobic001G097900 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic006G106300--Sobic001G474400 Sobic006G106300--Sobic002G364900 Sobic001G099900--Sobic004G208500 Sobic001G099900--Sobic001G015400 Sobic001G467100 Sobic001G467100 Sobic001G099900--Sobic001G467100 Sobic001G099900--Sobic002G150700 Sobic003G146600 Sobic003G146600 Sobic001G099900--Sobic003G146600 Sobic001G099900--Sobic001G474400 Sobic001G428800 Sobic001G428800 Sobic001G099900--Sobic001G428800 Sobic006G142400 Sobic006G142400 Sobic001G099900--Sobic006G142400 Sobic001G099900--Sobic001G156900 Sobic003G246000 Sobic003G246000 Sobic001G085800--Sobic003G246000 Sobic005G115500 Sobic005G115500 Sobic001G085800--Sobic005G115500 Sobic001G085800--Sobic002G364900 Sobic001G085800--Sobic002G160700 Sobic002G145800 Sobic002G145800 Sobic001G085800--Sobic002G145800 Sobic006G058800 Sobic006G058800 Sobic001G085800--Sobic006G058800 Sobic002G386600 Sobic002G386600 Sobic001G085800--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic001G085800--Sobic004G356200 Sobic001G469200 Sobic001G469200 Sobic001G085800--Sobic001G469200 Sobic001G474400--Sobic005G110499 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic010G223400 Sobic010G223400 Sobic001G474400--Sobic010G223400 Sobic001G474400--Sobic001G467100 Sobic001G474400--Sobic006G265600
Octagon: transcription factors


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