Gene annotation
Transcriptome id Sobic.002G119600.1
Synonym SDG3, Sb02g010210, SUVH2, ATSUVH2
Functional annotation histone-lysine N-methyltransferase, putative, expressed
UniProt C5X500
Pfam PF00856 PF05033 PF02182
Panther DB PTHR22884 PTHR22884:SF95
NCBI CDD KOG1082; Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
KEGG Orthology K11420; [histone H3]-lysine9 N-trimethyltransferase EHMT
Gene Ontology GO:0005515; protein binding GO:0018024histone-lysine N-methyltransferase activity GO:0008270zinc ion binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G33290 : SU(VAR)3-9 homolog 2
RAP-DB (Rice) LOC_Os07g25450.1 : histone-lysine N-methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a045771 , Zm00025a013586
Brachypodium -
Barley HORVU2Hr1G053260.2 , HORVU2Hr1G053260.1 , HORVU2Hr1G053260.3
Wheat -
Populus -


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cDNA sequences
Sobic.002G119600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
3 Sobic.007G145400 expressed protein -
4 Sobic.004G204100 expressed protein -
5 Sobic.010G000800 PHD-finger domain containing protein, expressed -
6 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
7 Sobic.005G110499 - K14006: protein transport protein SEC23
8 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
9 Sobic.003G334700 HEAT, putative, expressed K16803: CKAP5, cytoskeleton-associated protein 5
10 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
11 Sobic.010G070600 DNA binding protein, putative, expressed -
12 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
13 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
14 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
15 Sobic.007G047600 expressed protein -
16 Sobic.003G314700 expressed protein -
17 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
18 Sobic.008G092800 expressed protein -
19 Sobic.005G059500 expressed protein -
20 Sobic.008G140700 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G119600 Sobic002G119600 Sobic001G156900 Sobic001G156900 Sobic002G119600--Sobic001G156900 Sobic010G139500 Sobic010G139500 Sobic002G119600--Sobic010G139500 Sobic007G145400 Sobic007G145400 Sobic002G119600--Sobic007G145400 Sobic004G204100 Sobic004G204100 Sobic002G119600--Sobic004G204100 Sobic010G000800 Sobic010G000800 Sobic002G119600--Sobic010G000800 Sobic002G412700 Sobic002G412700 Sobic002G119600--Sobic002G412700 Sobic005G110499 Sobic005G110499 Sobic002G119600--Sobic005G110499 Sobic001G248100 Sobic001G248100 Sobic002G119600--Sobic001G248100 Sobic003G334700 Sobic003G334700 Sobic002G119600--Sobic003G334700 Sobic009G122500 Sobic009G122500 Sobic001G156900--Sobic009G122500 Sobic001G156900--Sobic002G119600 Sobic001G308400 Sobic001G308400 Sobic001G156900--Sobic001G308400 Sobic002G227500 Sobic002G227500 Sobic001G156900--Sobic002G227500 Sobic004G122900 Sobic004G122900 Sobic001G156900--Sobic004G122900 Sobic001G335000 Sobic001G335000 Sobic001G156900--Sobic001G335000 Sobic010G169900 Sobic010G169900 Sobic001G156900--Sobic010G169900 Sobic003G181700 Sobic003G181700 Sobic001G156900--Sobic003G181700 Sobic001G156900--Sobic005G110499 Sobic010G139500--Sobic004G204100 Sobic010G139500--Sobic003G334700 Sobic010G139500--Sobic002G119600 Sobic003G314700 Sobic003G314700 Sobic010G139500--Sobic003G314700 Sobic003G405500 Sobic003G405500 Sobic010G139500--Sobic003G405500 Sobic008G124800 Sobic008G124800 Sobic010G139500--Sobic008G124800 Sobic010G139500--Sobic002G412700 Sobic010G139500--Sobic007G145400 Sobic010G070600 Sobic010G070600 Sobic010G139500--Sobic010G070600 Sobic001G474400 Sobic001G474400 Sobic007G145400--Sobic001G474400 Sobic009G003700 Sobic009G003700 Sobic007G145400--Sobic009G003700 Sobic007G145400--Sobic001G248100 Sobic007G145400--Sobic002G119600 Sobic006G261400 Sobic006G261400 Sobic007G145400--Sobic006G261400 Sobic007G145400--Sobic003G314700 Sobic001G467100 Sobic001G467100 Sobic007G145400--Sobic001G467100 Sobic008G092800 Sobic008G092800 Sobic007G145400--Sobic008G092800 Sobic006G245900 Sobic006G245900 Sobic007G145400--Sobic006G245900 Sobic010G223100 Sobic010G223100 Sobic004G204100--Sobic010G223100 Sobic004G204100--Sobic010G139500 Sobic001G287500 Sobic001G287500 Sobic004G204100--Sobic001G287500 Sobic003G233400 Sobic003G233400 Sobic004G204100--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G204100--Sobic004G023100 Sobic004G204100--Sobic003G314700 Sobic002G179400 Sobic002G179400 Sobic004G204100--Sobic002G179400 Sobic004G040500 Sobic004G040500 Sobic004G204100--Sobic004G040500 Sobic003G163200 Sobic003G163200 Sobic004G204100--Sobic003G163200 Sobic004G265500 Sobic004G265500 Sobic010G000800--Sobic004G265500 Sobic004G322400 Sobic004G322400 Sobic010G000800--Sobic004G322400 Sobic010G000800--Sobic003G163200 Sobic003G379200 Sobic003G379200 Sobic010G000800--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic010G000800--Sobic003G189600 Sobic010G000800--Sobic002G179400 Sobic006G077200 Sobic006G077200 Sobic010G000800--Sobic006G077200 Sobic010G000800--Sobic006G261400 Sobic002G429300 Sobic002G429300 Sobic010G000800--Sobic002G429300 Sobic002G412700--Sobic001G248100 Sobic002G412700--Sobic003G405500 Sobic002G412700--Sobic003G314700 Sobic004G034700 Sobic004G034700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G412700--Sobic002G119600 Sobic002G412700--Sobic010G139500 Sobic005G110499--Sobic003G189600 Sobic005G110499--Sobic001G474400 Sobic005G110499--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic005G110499--Sobic003G394200 Sobic004G053500 Sobic004G053500 Sobic005G110499--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic005G110499--Sobic002G401500 Sobic006G021700 Sobic006G021700 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic003G209200 Sobic003G209200 Sobic005G110499--Sobic003G209200 Sobic001G248100--Sobic002G412700 Sobic001G248100--Sobic010G000800 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500 Sobic003G334700--Sobic010G139500 Sobic001G437400 Sobic001G437400 Sobic003G334700--Sobic001G437400 Sobic003G334700--Sobic003G314700 Sobic001G118000 Sobic001G118000 Sobic003G334700--Sobic001G118000 Sobic005G059500 Sobic005G059500 Sobic003G334700--Sobic005G059500 Sobic003G334700--Sobic002G119600 Sobic003G293000 Sobic003G293000 Sobic003G334700--Sobic003G293000 Sobic004G336300 Sobic004G336300 Sobic003G334700--Sobic004G336300 Sobic003G334700--Sobic010G000800
Octagon: transcription factors


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