Gene annotation
Transcriptome id Sobic.008G140700.1
Synonym Sb08g019140
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PDL9
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF437
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G00830 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os12g38800.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004303 , Zm00025a031002
Brachypodium -
Barley -
Wheat TraesCS5B02G082000 , TraesCS5B02G082000 , TraesCS5A02G075900 , TraesCS5A02G075900 , TraesCS5A02G075900 , TraesCS5D02G089300 , TraesCS5D02G089300 , TraesCS5D02G089300
Populus -


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cDNA sequences
Sobic.008G140700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
2 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
3 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
4 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
5 Sobic.003G312700 glycosyl hydrolase family 47 domain contain protein, expressed K10085: ER degradation enhancer, mannosidase alpha-like 2
6 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81
7 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
8 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
9 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
10 Sobic.010G070600 DNA binding protein, putative, expressed -
11 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
12 Sobic.002G063900 zinc ion binding protein, putative, expressed -
13 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
14 Sobic.002G119600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
15 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
16 Sobic.004G141800 expressed protein -
17 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.001G214600 expressed protein -
19 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
20 Sobic.004G357100 expressed protein -


Gene co-expression network
sample Sobic008G140700 Sobic008G140700 Sobic001G020000 Sobic001G020000 Sobic008G140700--Sobic001G020000 Sobic001G087600 Sobic001G087600 Sobic008G140700--Sobic001G087600 Sobic010G034100 Sobic010G034100 Sobic008G140700--Sobic010G034100 Sobic003G405500 Sobic003G405500 Sobic008G140700--Sobic003G405500 Sobic003G312700 Sobic003G312700 Sobic008G140700--Sobic003G312700 Sobic003G152400 Sobic003G152400 Sobic008G140700--Sobic003G152400 Sobic006G234700 Sobic006G234700 Sobic008G140700--Sobic006G234700 Sobic002G227500 Sobic002G227500 Sobic008G140700--Sobic002G227500 Sobic010G059500 Sobic010G059500 Sobic008G140700--Sobic010G059500 Sobic001G219600 Sobic001G219600 Sobic001G020000--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic010G034100--Sobic010G059500 Sobic001G035200 Sobic001G035200 Sobic010G034100--Sobic001G035200 Sobic009G192300 Sobic009G192300 Sobic010G034100--Sobic009G192300 Sobic001G405600 Sobic001G405600 Sobic010G034100--Sobic001G405600 Sobic009G084900 Sobic009G084900 Sobic010G034100--Sobic009G084900 Sobic001G283600 Sobic001G283600 Sobic010G034100--Sobic001G283600 Sobic010G034100--Sobic001G020000 Sobic006G252900 Sobic006G252900 Sobic010G034100--Sobic006G252900 Sobic010G034100--Sobic002G227500 Sobic001G145400 Sobic001G145400 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic003G405500--Sobic002G430300 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic004G141800 Sobic004G141800 Sobic003G405500--Sobic004G141800 Sobic006G077200 Sobic006G077200 Sobic003G405500--Sobic006G077200 Sobic003G405500--Sobic010G059500 Sobic003G314700 Sobic003G314700 Sobic003G405500--Sobic003G314700 Sobic003G312700--Sobic001G087600 Sobic001G014300 Sobic001G014300 Sobic003G312700--Sobic001G014300 Sobic003G312700--Sobic003G405500 Sobic003G312700--Sobic004G141800 Sobic003G312700--Sobic002G430300 Sobic004G355800 Sobic004G355800 Sobic003G312700--Sobic004G355800 Sobic003G312700--Sobic003G152400 Sobic002G063900 Sobic002G063900 Sobic003G312700--Sobic002G063900 Sobic003G312700--Sobic008G140700 Sobic004G357100 Sobic004G357100 Sobic003G152400--Sobic004G357100 Sobic007G042400 Sobic007G042400 Sobic003G152400--Sobic007G042400 Sobic003G152400--Sobic002G430300 Sobic004G223600 Sobic004G223600 Sobic003G152400--Sobic004G223600 Sobic008G098300 Sobic008G098300 Sobic003G152400--Sobic008G098300 Sobic003G152400--Sobic009G084900 Sobic003G152400--Sobic002G063900 Sobic004G246100 Sobic004G246100 Sobic003G152400--Sobic004G246100 Sobic003G152400--Sobic001G145400 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic006G234700--Sobic010G059500 Sobic006G234700--Sobic009G192300 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic006G234700--Sobic009G084900 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic001G308400 Sobic001G308400 Sobic002G227500--Sobic001G308400 Sobic003G021600 Sobic003G021600 Sobic002G227500--Sobic003G021600 Sobic001G156900 Sobic001G156900 Sobic002G227500--Sobic001G156900 Sobic010G169900 Sobic010G169900 Sobic002G227500--Sobic010G169900 Sobic004G265500 Sobic004G265500 Sobic002G227500--Sobic004G265500 Sobic003G043000 Sobic003G043000 Sobic002G227500--Sobic003G043000 Sobic002G227500--Sobic003G405500 Sobic003G181700 Sobic003G181700 Sobic002G227500--Sobic003G181700 Sobic002G227500--Sobic010G059500 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic010G059500--Sobic001G035200 Sobic010G059500--Sobic004G096400 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200
Octagon: transcription factors


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