Gene annotation
Transcriptome id Sobic.003G312700.2,Sobic.003G312700.1
Synonym Sb03g036080
Functional annotation glycosyl hydrolase family 47 domain contain protein, expressed
UniProt C5XLL0 , A0A1B6Q6D6
Pfam PF01532
Panther DB PTHR11742 PTHR11742:SF25
NCBI CDD -
KEGG Orthology K10085; ER degradation enhancer, mannosidase alpha-like 2
Gene Ontology GO:0016020; membrane GO:0005509calcium ion binding GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity


Orthologs (automatic annotation)
TAIR AT5G43710 : Glycosyl hydrolase family 47 protein
RAP-DB (Rice) LOC_Os01g56670.1 : glycosyl hydrolase family 47 domain contain protein, expressed
MaizeGDB (Corn) Zm00025a039911
Brachypodium KQK10004
Barley HORVU3Hr1G075850.8 , HORVU3Hr1G075850.9 , HORVU3Hr1G075850.2 , HORVU3Hr1G075850.3 , HORVU3Hr1G075850.1 , HORVU3Hr1G075850.6 , HORVU3Hr1G075850.7 , HORVU3Hr1G075850.4 , HORVU3Hr1G075850.5
Wheat TraesCS3A02G322000 , TraesCS3B02G344300 , TraesCS3B02G344300 , TraesCS3D02G309300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
2 Sobic.001G014300 OsFBDUF15 - F-box and DUF domain containing protein, expressed -
3 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
4 Sobic.004G141800 expressed protein -
5 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
6 Sobic.004G355800 expressed protein -
7 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81
8 Sobic.002G063900 zinc ion binding protein, putative, expressed -
9 Sobic.008G140700 RNA recognition motif containing protein, putative, expressed -
10 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
11 Sobic.002G051750 - -
12 Sobic.006G067600 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
13 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
14 Sobic.003G416700 homeobox domain containing protein, expressed -
15 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
16 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
17 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
18 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
20 Sobic.002G154000 EDM2, putative, expressed -


Gene co-expression network
sample Sobic003G312700 Sobic003G312700 Sobic001G087600 Sobic001G087600 Sobic003G312700--Sobic001G087600 Sobic001G014300 Sobic001G014300 Sobic003G312700--Sobic001G014300 Sobic003G405500 Sobic003G405500 Sobic003G312700--Sobic003G405500 Sobic004G141800 Sobic004G141800 Sobic003G312700--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G312700--Sobic002G430300 Sobic004G355800 Sobic004G355800 Sobic003G312700--Sobic004G355800 Sobic003G152400 Sobic003G152400 Sobic003G312700--Sobic003G152400 Sobic002G063900 Sobic002G063900 Sobic003G312700--Sobic002G063900 Sobic008G140700 Sobic008G140700 Sobic003G312700--Sobic008G140700 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic008G054600 Sobic008G054600 Sobic001G014300--Sobic008G054600 Sobic001G014300--Sobic003G312700 Sobic002G051750 Sobic002G051750 Sobic001G014300--Sobic002G051750 Sobic004G096400 Sobic004G096400 Sobic001G014300--Sobic004G096400 Sobic004G265500 Sobic004G265500 Sobic001G014300--Sobic004G265500 Sobic006G080400 Sobic006G080400 Sobic001G014300--Sobic006G080400 Sobic003G163200 Sobic003G163200 Sobic001G014300--Sobic003G163200 Sobic001G014300--Sobic002G154000 Sobic006G240100 Sobic006G240100 Sobic001G014300--Sobic006G240100 Sobic001G145400 Sobic001G145400 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic003G405500--Sobic002G430300 Sobic009G084900 Sobic009G084900 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic003G405500--Sobic004G141800 Sobic006G077200 Sobic006G077200 Sobic003G405500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic003G405500--Sobic010G059500 Sobic003G314700 Sobic003G314700 Sobic003G405500--Sobic003G314700 Sobic004G141800--Sobic002G430300 Sobic004G141800--Sobic003G405500 Sobic004G236800 Sobic004G236800 Sobic004G141800--Sobic004G236800 Sobic002G227500 Sobic002G227500 Sobic004G141800--Sobic002G227500 Sobic001G030000 Sobic001G030000 Sobic004G141800--Sobic001G030000 Sobic003G143800 Sobic003G143800 Sobic004G141800--Sobic003G143800 Sobic004G141800--Sobic003G312700 Sobic001G035200 Sobic001G035200 Sobic004G141800--Sobic001G035200 Sobic002G386600 Sobic002G386600 Sobic004G141800--Sobic002G386600 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic002G430300--Sobic003G405500 Sobic002G430300--Sobic003G152400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G430300--Sobic002G145800 Sobic005G200900 Sobic005G200900 Sobic004G355800--Sobic005G200900 Sobic006G118700 Sobic006G118700 Sobic004G355800--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G355800--Sobic006G210000 Sobic004G355800--Sobic002G154000 Sobic004G155600 Sobic004G155600 Sobic004G355800--Sobic004G155600 Sobic005G191900 Sobic005G191900 Sobic004G355800--Sobic005G191900 Sobic006G067600 Sobic006G067600 Sobic004G355800--Sobic006G067600 Sobic004G156500 Sobic004G156500 Sobic004G355800--Sobic004G156500 Sobic008G002500 Sobic008G002500 Sobic004G355800--Sobic008G002500 Sobic004G357100 Sobic004G357100 Sobic003G152400--Sobic004G357100 Sobic007G042400 Sobic007G042400 Sobic003G152400--Sobic007G042400 Sobic003G152400--Sobic002G430300 Sobic004G223600 Sobic004G223600 Sobic003G152400--Sobic004G223600 Sobic008G098300 Sobic008G098300 Sobic003G152400--Sobic008G098300 Sobic003G152400--Sobic009G084900 Sobic003G152400--Sobic002G063900 Sobic004G246100 Sobic004G246100 Sobic003G152400--Sobic004G246100 Sobic003G152400--Sobic001G145400 Sobic008G173100 Sobic008G173100 Sobic002G063900--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic002G063900--Sobic006G116100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic008G140700--Sobic001G020000 Sobic008G140700--Sobic001G087600 Sobic010G034100 Sobic010G034100 Sobic008G140700--Sobic010G034100 Sobic008G140700--Sobic003G405500 Sobic008G140700--Sobic003G312700 Sobic008G140700--Sobic003G152400 Sobic006G234700 Sobic006G234700 Sobic008G140700--Sobic006G234700 Sobic008G140700--Sobic002G227500 Sobic008G140700--Sobic010G059500
Octagon: transcription factors


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