Gene annotation
Transcriptome id Sobic.002G398700.2
Synonym
Functional annotation tim44-like domain containing protein, expressed
UniProt A0A1W0W7S5
Pfam PF04280
Panther DB PTHR28554 PTHR28554:SF1
NCBI CDD -
KEGG Orthology K17426; large subunit ribosomal protein L45
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27395 : Mitochondrial inner membrane translocase complex, subunit Tim44-related protein
RAP-DB (Rice) LOC_Os07g45300.1 : tim44-like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048976
Brachypodium KQK14923
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G398700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
2 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
3 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
4 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
5 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
6 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.002G408900 adenyl cyclase, putative, expressed -
8 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
9 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
10 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
11 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
12 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
13 Sobic.001G466500 PPR repeat containing protein, expressed -
14 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
15 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
16 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
17 Sobic.008G152000 biotin--protein ligase, putative, expressed K03801: lipoyl(octanoyl) transferase
18 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
19 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
20 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4


Gene co-expression network
sample Sobic002G398700 Sobic002G398700 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic006G106300 Sobic006G106300 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic001G015400 Sobic001G015400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic003G304400--Sobic002G364900 Sobic003G397900 Sobic003G397900 Sobic003G304400--Sobic003G397900 Sobic003G304400--Sobic002G398700 Sobic001G474400 Sobic001G474400 Sobic003G304400--Sobic001G474400 Sobic003G304400--Sobic002G150700 Sobic010G192600 Sobic010G192600 Sobic003G304400--Sobic010G192600 Sobic003G202100 Sobic003G202100 Sobic003G304400--Sobic003G202100 Sobic003G304400--Sobic001G015400 Sobic006G265600 Sobic006G265600 Sobic003G304400--Sobic006G265600 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic006G106300--Sobic003G021600 Sobic006G106300--Sobic002G398700 Sobic001G097900 Sobic001G097900 Sobic006G106300--Sobic001G097900 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic006G106300--Sobic001G474400 Sobic006G106300--Sobic002G364900 Sobic010G091400--Sobic002G398700 Sobic003G218200 Sobic003G218200 Sobic010G091400--Sobic003G218200 Sobic009G194000 Sobic009G194000 Sobic010G091400--Sobic009G194000 Sobic010G091400--Sobic003G021600 Sobic008G037700 Sobic008G037700 Sobic010G091400--Sobic008G037700 Sobic003G297700 Sobic003G297700 Sobic010G091400--Sobic003G297700 Sobic002G252400 Sobic002G252400 Sobic010G091400--Sobic002G252400 Sobic002G356200 Sobic002G356200 Sobic010G091400--Sobic002G356200 Sobic003G181700 Sobic003G181700 Sobic010G091400--Sobic003G181700 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic001G015400--Sobic006G106300 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic003G146600 Sobic003G146600 Sobic002G150700--Sobic003G146600 Sobic002G150700--Sobic001G099900 Sobic002G150700--Sobic004G208500 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic002G150700--Sobic003G304400 Sobic005G026400--Sobic002G398700 Sobic005G026400--Sobic003G146600 Sobic004G224600 Sobic004G224600 Sobic005G026400--Sobic004G224600 Sobic002G235200 Sobic002G235200 Sobic005G026400--Sobic002G235200 Sobic003G308500 Sobic003G308500 Sobic005G026400--Sobic003G308500 Sobic005G026400--Sobic002G356200 Sobic003G012000 Sobic003G012000 Sobic005G026400--Sobic003G012000 Sobic005G026400--Sobic003G143800 Sobic005G026400--Sobic001G015400 Sobic002G408900--Sobic002G150700 Sobic009G249800 Sobic009G249800 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic002G408900--Sobic001G015400 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic002G408900--Sobic001G099900 Sobic002G386900 Sobic002G386900 Sobic002G386600--Sobic002G386900 Sobic006G029100 Sobic006G029100 Sobic002G386600--Sobic006G029100 Sobic004G141800 Sobic004G141800 Sobic002G386600--Sobic004G141800 Sobic002G386600--Sobic006G265600 Sobic002G386600--Sobic002G398700 Sobic002G386600--Sobic002G160700 Sobic001G085800 Sobic001G085800 Sobic002G386600--Sobic001G085800 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000 Sobic002G364900--Sobic003G304400 Sobic002G364900--Sobic010G192600 Sobic002G364900--Sobic006G265600 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic002G364900--Sobic006G106300 Sobic002G364900--Sobic001G099900 Sobic002G364900--Sobic001G085800 Sobic002G364900--Sobic001G474400
Octagon: transcription factors


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