Gene annotation
Transcriptome id Sobic.006G193300.1
Synonym EMB2762
Functional annotation nucleolar complex protein, putative, expressed
UniProt A0A1B6PMT2
Pfam PF03914
Panther DB PTHR12455 PTHR12455:SF0
NCBI CDD KOG2154; Predicted nucleolar protein involved in ribosome biogenesis
KEGG Orthology K14771; NOC4, U3 small nucleolar RNA-associated protein 19
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17250 : CCAAT-binding factor
RAP-DB (Rice) LOC_Os04g49580.1 : nucleolar complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a056699
Brachypodium KQJ84251
Barley HORVU2Hr1G104900.12 , HORVU2Hr1G104900.34 , HORVU2Hr1G104900.35 , HORVU2Hr1G104900.32 , HORVU2Hr1G104900.33 , HORVU2Hr1G104900.30 , HORVU2Hr1G104900.31 , HORVU2Hr1G104900.4 , HORVU2Hr1G104900.5 , HORVU2Hr1G104900.2 , HORVU2Hr1G104900.1 , HORVU2Hr1G104900.21 , HORVU2Hr1G104900.23 , HORVU2Hr1G104900.22 , HORVU2Hr1G104900.25 , HORVU2Hr1G104900.24 , HORVU2Hr1G104900.27 , HORVU2Hr1G104900.26 , HORVU2Hr1G104900.29 , HORVU2Hr1G104900.28
Wheat TraesCS2D02G455500 , TraesCS2B02G477200 , TraesCS2A02G455100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
2 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
3 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G408900 adenyl cyclase, putative, expressed -
5 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
6 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
7 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
8 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
9 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
10 Sobic.002G092050 - -
11 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
12 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
13 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
14 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
15 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
16 Sobic.004G224600 expressed protein -
17 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
18 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
19 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1


Gene co-expression network
sample Sobic006G193300 Sobic006G193300 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G125900 Sobic006G125900 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic001G145400 Sobic001G145400 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic004G340400--Sobic001G401500 Sobic001G429600--Sobic003G199300 Sobic002G372500 Sobic002G372500 Sobic001G429600--Sobic002G372500 Sobic009G101200 Sobic009G101200 Sobic001G429600--Sobic009G101200 Sobic009G211200 Sobic009G211200 Sobic001G429600--Sobic009G211200 Sobic004G019200 Sobic004G019200 Sobic001G429600--Sobic004G019200 Sobic001G429600--Sobic006G125900 Sobic001G429600--Sobic006G193300 Sobic001G429600--Sobic001G052400 Sobic010G174700 Sobic010G174700 Sobic001G429600--Sobic010G174700 Sobic001G461300--Sobic002G372500 Sobic001G461300--Sobic006G193300 Sobic001G408600 Sobic001G408600 Sobic001G461300--Sobic001G408600 Sobic006G002800 Sobic006G002800 Sobic001G461300--Sobic006G002800 Sobic009G234700 Sobic009G234700 Sobic001G461300--Sobic009G234700 Sobic002G371600 Sobic002G371600 Sobic001G461300--Sobic002G371600 Sobic007G089800 Sobic007G089800 Sobic001G461300--Sobic007G089800 Sobic001G373000 Sobic001G373000 Sobic001G461300--Sobic001G373000 Sobic004G224600 Sobic004G224600 Sobic001G461300--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic002G408900--Sobic002G150700 Sobic009G249800 Sobic009G249800 Sobic002G408900--Sobic009G249800 Sobic004G208500 Sobic004G208500 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic001G015400 Sobic001G015400 Sobic002G408900--Sobic001G015400 Sobic002G398700 Sobic002G398700 Sobic002G408900--Sobic002G398700 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic001G099900 Sobic001G099900 Sobic002G408900--Sobic001G099900 Sobic010G205900 Sobic010G205900 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic008G049100--Sobic006G193300 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic006G125900--Sobic010G174700 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic001G401500--Sobic004G340400 Sobic001G259000 Sobic001G259000 Sobic001G401500--Sobic001G259000 Sobic001G401500--Sobic010G007100 Sobic001G401500--Sobic009G211200 Sobic001G244300 Sobic001G244300 Sobic001G401500--Sobic001G244300 Sobic001G401500--Sobic006G193300 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic006G086600 Sobic006G086600 Sobic001G401500--Sobic006G086600 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic004G085000 Sobic004G085000 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200
Octagon: transcription factors


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