Gene annotation
Transcriptome id Sobic.003G199300.1
Synonym
Functional annotation down-regulated in metastasis family protein, expressed
UniProt C5XPE4
Pfam PF07539
Panther DB PTHR17695 PTHR17695:SF11
NCBI CDD KOG1823; DRIM (Down-regulated in metastasis)-like proteins
KEGG Orthology K14772; U3 small nucleolar RNA-associated protein 20
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30990 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g40250.1 : down-regulated in metastasis family protein, expressed
MaizeGDB (Corn) Zm00025a023134 , Zm00025a027786
Brachypodium KQK08465
Barley HORVU3Hr1G050490.22 , HORVU3Hr1G050490.20 , HORVU3Hr1G050490.21 , HORVU3Hr1G050490.24 , HORVU3Hr1G050490.25 , HORVU3Hr1G050490.12 , HORVU3Hr1G050490.19 , HORVU3Hr1G050490.18 , HORVU3Hr1G050490.13 , HORVU3Hr1G050490.11 , HORVU3Hr1G050490.10 , HORVU3Hr1G050490.17 , HORVU3Hr1G050490.16 , HORVU3Hr1G050490.15 , HORVU3Hr1G050490.14 , HORVU3Hr1G050490.9 , HORVU3Hr1G050490.8 , HORVU3Hr1G050490.3 , HORVU3Hr1G050490.2 , HORVU3Hr1G050490.1 , HORVU3Hr1G050490.7 , HORVU3Hr1G050490.6 , HORVU3Hr1G050490.5 , HORVU3Hr1G050490.4
Wheat TraesCS3A02G209700 , TraesCS3B02G239500 , TraesCS3D02G212600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
2 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
3 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
4 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
5 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
6 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
7 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
8 Sobic.010G224700 - K17680: twinkle protein
9 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
10 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
11 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
12 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
13 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
14 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
15 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
16 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
17 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
18 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
19 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
20 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1


Gene co-expression network
sample Sobic003G199300 Sobic003G199300 Sobic002G071400 Sobic002G071400 Sobic003G199300--Sobic002G071400 Sobic008G049100 Sobic008G049100 Sobic003G199300--Sobic008G049100 Sobic004G085000 Sobic004G085000 Sobic003G199300--Sobic004G085000 Sobic010G205900 Sobic010G205900 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic009G246500 Sobic009G246500 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G234300 Sobic002G234300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic003G123200 Sobic003G123200 Sobic002G071400--Sobic003G123200 Sobic002G071400--Sobic004G085000 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic001G145400 Sobic001G145400 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic004G085000--Sobic006G185200 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic001G429600--Sobic003G199300 Sobic002G372500 Sobic002G372500 Sobic001G429600--Sobic002G372500 Sobic001G429600--Sobic009G101200 Sobic009G211200 Sobic009G211200 Sobic001G429600--Sobic009G211200 Sobic004G019200 Sobic004G019200 Sobic001G429600--Sobic004G019200 Sobic006G125900 Sobic006G125900 Sobic001G429600--Sobic006G125900 Sobic001G429600--Sobic006G193300 Sobic001G052400 Sobic001G052400 Sobic001G429600--Sobic001G052400 Sobic010G174700 Sobic010G174700 Sobic001G429600--Sobic010G174700 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic010G224700--Sobic003G199300 Sobic006G185200--Sobic002G378100 Sobic006G185200--Sobic004G085000 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic006G185200--Sobic001G145400
Octagon: transcription factors


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