Gene annotation
Transcriptome id Sobic.006G185200.1,Sobic.006G185200.3,Sobic.006G185200.4
Synonym SDE4, NRPD1A, POLIVA, Sb06g025933, NRPD1, SMD2
Functional annotation RNA polymerase IV subunit, putative, expressed
UniProt A0A1Z5REK7 , A0A1B6PMR7
Pfam PF05000 PF04997 PF04998 PF04983 PF11523 PF00623
Panther DB PTHR19376 PTHR19376:SF40
NCBI CDD KOG0260; RNA polymerase II, large subunit
KEGG Orthology K16250; DNA-directed RNA polymerase IV subunit 1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G63020 : nuclear RNA polymerase D1A
RAP-DB (Rice) LOC_Os04g48370.1 : RNA polymerase IV subunit, putative, expressed
MaizeGDB (Corn) Zm00025a005109
Brachypodium PNT71748 , PNT71743 , PNT71745 , PNT71744 , PNT71747 , PNT71746 , KQK07373
Barley HORVU1Hr1G023350.4 , HORVU1Hr1G023350.5 , HORVU1Hr1G023350.6 , HORVU1Hr1G023350.7 , HORVU1Hr1G023350.1 , HORVU1Hr1G023350.2 , HORVU1Hr1G023350.3 , HORVU1Hr1G023350.8 , HORVU1Hr1G023350.9 , HORVU1Hr1G023350.63 , HORVU1Hr1G023350.62 , HORVU1Hr1G023350.61 , HORVU1Hr1G023350.60 , HORVU1Hr1G023350.64 , HORVU1Hr1G023350.33 , HORVU1Hr1G023350.45 , HORVU1Hr1G023350.44 , HORVU1Hr1G023350.47 , HORVU1Hr1G023350.46 , HORVU1Hr1G023350.41 , HORVU1Hr1G023350.40 , HORVU1Hr1G023350.43 , HORVU1Hr1G023350.42 , HORVU1Hr1G023350.49 , HORVU1Hr1G023350.48 , HORVU1Hr1G023350.58 , HORVU1Hr1G023350.59 , HORVU1Hr1G023350.65 , HORVU1Hr1G023350.52 , HORVU1Hr1G023350.53 , HORVU1Hr1G023350.50 , HORVU1Hr1G023350.51 , HORVU1Hr1G023350.56 , HORVU1Hr1G023350.57 , HORVU1Hr1G023350.54 , HORVU1Hr1G023350.55 , HORVU1Hr1G023350.29 , HORVU1Hr1G023350.28 , HORVU1Hr1G023350.27 , HORVU1Hr1G023350.26 , HORVU1Hr1G023350.25 , HORVU1Hr1G023350.24 , HORVU1Hr1G023350.23 , HORVU1Hr1G023350.22 , HORVU1Hr1G023350.21 , HORVU1Hr1G023350.20 , HORVU1Hr1G023350.38 , HORVU1Hr1G023350.39 , HORVU1Hr1G023350.34 , HORVU1Hr1G023350.35 , HORVU1Hr1G023350.36 , HORVU1Hr1G023350.37 , HORVU1Hr1G023350.30 , HORVU1Hr1G023350.31 , HORVU1Hr1G023350.32 , HORVU0Hr1G000350.1 , HORVU1Hr1G023350.10 , HORVU1Hr1G023350.16 , HORVU1Hr1G023350.17 , HORVU1Hr1G023350.14 , HORVU1Hr1G023350.15 , HORVU1Hr1G023350.12 , HORVU1Hr1G023350.13 , HORVU1Hr1G023350.11 , HORVU1Hr1G023350.18 , HORVU1Hr1G023350.19
Wheat TraesCS1B02G123600 , TraesCS1B02G123600 , TraesCS1B02G123600 , TraesCS1D02G108700 , TraesCS1D02G108700 , TraesCS1D02G108700 , TraesCS1A02G106300 , TraesCS1A02G106300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
2 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
3 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
4 Sobic.001G214600 expressed protein -
5 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
6 Sobic.010G147833 - -
7 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
8 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
9 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
10 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
11 Sobic.009G251200 expressed protein -
12 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
13 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
14 Sobic.010G255800 expressed protein -
15 Sobic.003G309050 - -
16 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
17 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
18 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
19 Sobic.010G224700 - K17680: twinkle protein
20 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius


Gene co-expression network
sample Sobic006G185200 Sobic006G185200 Sobic002G378100 Sobic002G378100 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic009G213200 Sobic009G213200 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic002G378100--Sobic009G213200 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic006G269800 Sobic006G269800 Sobic008G017100--Sobic006G269800 Sobic008G017100--Sobic010G224700 Sobic008G017100--Sobic006G185200 Sobic002G079100 Sobic002G079100 Sobic008G017100--Sobic002G079100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic009G213200--Sobic006G185200 Sobic009G213200--Sobic002G378100 Sobic007G097400 Sobic007G097400 Sobic009G213200--Sobic007G097400 Sobic009G213200--Sobic001G214600 Sobic002G373950 Sobic002G373950 Sobic009G213200--Sobic002G373950 Sobic009G213200--Sobic010G147833 Sobic005G160100 Sobic005G160100 Sobic009G213200--Sobic005G160100 Sobic006G231800 Sobic006G231800 Sobic009G213200--Sobic006G231800 Sobic009G251200 Sobic009G251200 Sobic009G213200--Sobic009G251200 Sobic010G147833--Sobic001G214600 Sobic010G147833--Sobic004G260100 Sobic001G170100 Sobic001G170100 Sobic010G147833--Sobic001G170100 Sobic007G019300 Sobic007G019300 Sobic010G147833--Sobic007G019300 Sobic001G426600 Sobic001G426600 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic007G120500 Sobic007G120500 Sobic010G147833--Sobic007G120500 Sobic001G287500 Sobic001G287500 Sobic010G147833--Sobic001G287500 Sobic004G223600--Sobic001G219900 Sobic004G223600--Sobic001G214600 Sobic004G223600--Sobic002G317200 Sobic003G307000 Sobic003G307000 Sobic004G223600--Sobic003G307000 Sobic007G042400 Sobic007G042400 Sobic004G223600--Sobic007G042400 Sobic004G223600--Sobic009G247400 Sobic001G311500 Sobic001G311500 Sobic004G223600--Sobic001G311500 Sobic002G071500 Sobic002G071500 Sobic004G223600--Sobic002G071500 Sobic003G152400 Sobic003G152400 Sobic004G223600--Sobic003G152400 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic002G397500 Sobic002G397500 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic001G145400--Sobic004G085000
Octagon: transcription factors


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