Gene annotation
Transcriptome id Sobic.003G309050.3,Sobic.003G309050.1,Sobic.003G309050.2,Sobic.003G309050.4
Synonym -
Functional annotation -
UniProt A0A1W0VZQ7 , A0A1W0VZS0 , A0A1W0VZS4 , A0A1W0VZQ4
Pfam -
Panther DB PTHR35480 PTHR35480:SF1
NCBI CDD KOG1850; Myosin-like coiled-coil protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34780 : maternal effect embryo arrest 22
RAP-DB (Rice) LOC_Os01g56290.1 : expressed protein
MaizeGDB (Corn) Zm00025a027410
Brachypodium -
Barley -
Wheat TraesCS3B02G338100 , TraesCS3B02G338100 , TraesCS3B02G338100 , TraesCS3D02G303600 , TraesCS3D02G303600 , TraesCS3D02G303600 , TraesCS3A02G298400 , TraesCS3A02G298400 , TraesCS3A02G298400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
2 Sobic.001G393900 FAD binding domain containing protein, expressed -
3 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
4 Sobic.002G399800 PWWP domain containing protein, expressed -
5 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
6 Sobic.006G245900 FAR1 family protein, expressed -
7 Sobic.001G417500 expressed protein -
8 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
9 Sobic.010G262100 expressed protein -
10 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
11 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
12 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
13 Sobic.001G453000 no apical meristem protein, putative, expressed -
14 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
15 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
16 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
17 Sobic.007G173500 growth regulator related protein, putative, expressed -
18 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
19 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
20 Sobic.003G052800 RST1, putative, expressed -


Gene co-expression network
sample Sobic003G309050 Sobic003G309050 Sobic001G451300 Sobic001G451300 Sobic003G309050--Sobic001G451300 Sobic001G393900 Sobic001G393900 Sobic003G309050--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic003G309050--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic003G309050--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic003G309050--Sobic002G371600 Sobic006G245900 Sobic006G245900 Sobic003G309050--Sobic006G245900 Sobic001G417500 Sobic001G417500 Sobic003G309050--Sobic001G417500 Sobic003G260400 Sobic003G260400 Sobic003G309050--Sobic003G260400 Sobic010G262100 Sobic010G262100 Sobic003G309050--Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic001G451300--Sobic002G399800 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic004G107200 Sobic004G107200 Sobic002G043100--Sobic004G107200 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G043100--Sobic002G399800 Sobic002G043100--Sobic010G262100 Sobic002G043100--Sobic006G269800 Sobic002G043100--Sobic003G309050 Sobic002G425500 Sobic002G425500 Sobic002G043100--Sobic002G425500 Sobic002G043100--Sobic001G393900 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic002G399800--Sobic001G089600 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic002G371600--Sobic010G262100 Sobic006G245900--Sobic002G371600 Sobic002G296400 Sobic002G296400 Sobic006G245900--Sobic002G296400 Sobic004G031300 Sobic004G031300 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic006G245900--Sobic003G308500 Sobic001G346900 Sobic001G346900 Sobic006G245900--Sobic001G346900 Sobic001G417500--Sobic006G269800 Sobic004G351800 Sobic004G351800 Sobic001G417500--Sobic004G351800 Sobic001G417500--Sobic003G309050 Sobic001G417500--Sobic002G043100 Sobic001G417500--Sobic001G393900 Sobic008G017100 Sobic008G017100 Sobic001G417500--Sobic008G017100 Sobic001G417500--Sobic004G107200 Sobic001G417500--Sobic007G173500 Sobic007G000300 Sobic007G000300 Sobic001G417500--Sobic007G000300 Sobic003G260400--Sobic010G079500 Sobic003G260400--Sobic003G095900 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic010G003400 Sobic010G003400 Sobic003G260400--Sobic010G003400 Sobic003G260400--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic003G260400--Sobic001G453400 Sobic003G260400--Sobic001G393900 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic010G262100--Sobic002G399800 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800
Octagon: transcription factors


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