Gene annotation
Transcriptome id Sobic.003G052800.1
Synonym Sb03g004580, RST1
Functional annotation RST1, putative, expressed
UniProt C5XNG2
Pfam PF12530
Panther DB PTHR16212 PTHR16212:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27670 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g07490.1 : RST1, putative, expressed
MaizeGDB (Corn) Zm00025a023273
Brachypodium PNT70012 , PNT70013 , PNT70016 , PNT70017 , PNT70014 , PNT70015 , PNT70018 , PNT70019 , KQK02886 , KQK02885 , PNT70021 , PNT70020
Barley HORVU3Hr1G016610.9 , HORVU3Hr1G016610.8 , HORVU3Hr1G016610.7 , HORVU3Hr1G016610.6 , HORVU3Hr1G016610.5 , HORVU3Hr1G016610.4 , HORVU3Hr1G016610.3 , HORVU3Hr1G016610.2 , HORVU3Hr1G016610.1 , HORVU3Hr1G016610.24 , HORVU3Hr1G016610.25 , HORVU3Hr1G016610.22 , HORVU3Hr1G016610.23 , HORVU3Hr1G016610.20 , HORVU3Hr1G016610.21 , HORVU3Hr1G016630.5 , HORVU3Hr1G016630.4 , HORVU3Hr1G016630.7 , HORVU3Hr1G016630.1 , HORVU3Hr1G016630.3 , HORVU3Hr1G016630.2 , HORVU3Hr1G016610.17 , HORVU3Hr1G016610.16 , HORVU3Hr1G016610.15 , HORVU3Hr1G016610.14 , HORVU3Hr1G016610.13 , HORVU3Hr1G016610.12 , HORVU3Hr1G016610.11 , HORVU3Hr1G016610.10 , HORVU3Hr1G016610.19 , HORVU3Hr1G016610.18
Wheat TraesCS3B02G108400 , TraesCS3B02G108400 , TraesCS3A02G093100 , TraesCS3D02G093400 , TraesCS3D02G093400 , TraesCS3A02G093100
Populus -


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cDNA sequences
Sobic.003G052800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
2 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
3 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
4 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
5 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
6 Sobic.001G051700 expressed protein -
7 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
8 Sobic.010G174700 expressed protein -
9 Sobic.003G217200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
10 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
11 Sobic.006G245900 FAR1 family protein, expressed -
12 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
13 Sobic.008G147200 tubulin, putative, expressed -
14 Sobic.010G262100 expressed protein -
15 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
16 Sobic.007G018400 expressed protein -
17 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
18 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
19 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
20 Sobic.005G133800 NEF1, putative, expressed -


Gene co-expression network
sample Sobic003G052800 Sobic003G052800 Sobic006G269800 Sobic006G269800 Sobic003G052800--Sobic006G269800 Sobic002G145800 Sobic002G145800 Sobic003G052800--Sobic002G145800 Sobic002G430300 Sobic002G430300 Sobic003G052800--Sobic002G430300 Sobic002G371600 Sobic002G371600 Sobic003G052800--Sobic002G371600 Sobic002G372500 Sobic002G372500 Sobic003G052800--Sobic002G372500 Sobic001G051700 Sobic001G051700 Sobic003G052800--Sobic001G051700 Sobic002G043100 Sobic002G043100 Sobic003G052800--Sobic002G043100 Sobic010G174700 Sobic010G174700 Sobic003G052800--Sobic010G174700 Sobic003G217200 Sobic003G217200 Sobic003G052800--Sobic003G217200 Sobic006G269800--Sobic002G145800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic003G405500 Sobic003G405500 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic001G145400 Sobic001G145400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G430300--Sobic002G145800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic001G429600 Sobic001G429600 Sobic002G372500--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic002G372500--Sobic001G461300 Sobic002G372500--Sobic003G052800 Sobic001G373000 Sobic001G373000 Sobic002G372500--Sobic001G373000 Sobic002G372500--Sobic006G269800 Sobic002G372500--Sobic001G451300 Sobic002G372500--Sobic010G174700 Sobic002G372500--Sobic008G147200 Sobic003G199300 Sobic003G199300 Sobic002G372500--Sobic003G199300 Sobic001G051700--Sobic003G416700 Sobic001G051700--Sobic002G145800 Sobic006G267600 Sobic006G267600 Sobic001G051700--Sobic006G267600 Sobic002G154000 Sobic002G154000 Sobic001G051700--Sobic002G154000 Sobic006G261400 Sobic006G261400 Sobic001G051700--Sobic006G261400 Sobic001G051700--Sobic006G224800 Sobic001G051700--Sobic007G183300 Sobic010G275500 Sobic010G275500 Sobic001G051700--Sobic010G275500 Sobic001G051700--Sobic003G062300 Sobic002G043100--Sobic004G107200 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G399800 Sobic002G399800 Sobic002G043100--Sobic002G399800 Sobic002G043100--Sobic010G262100 Sobic002G043100--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic002G043100--Sobic003G309050 Sobic002G043100--Sobic002G425500 Sobic002G043100--Sobic001G393900 Sobic006G036100 Sobic006G036100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic001G089600 Sobic001G089600 Sobic010G174700--Sobic001G089600 Sobic001G052400 Sobic001G052400 Sobic010G174700--Sobic001G052400 Sobic010G174700--Sobic002G145800 Sobic010G174700--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic010G174700--Sobic010G053600 Sobic001G453400 Sobic001G453400 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic001G542450 Sobic001G542450 Sobic003G217200--Sobic001G542450 Sobic003G217200--Sobic003G052800 Sobic003G217200--Sobic002G371600 Sobic003G217200--Sobic006G269800 Sobic002G374300 Sobic002G374300 Sobic003G217200--Sobic002G374300 Sobic008G088875 Sobic008G088875 Sobic003G217200--Sobic008G088875 Sobic003G217200--Sobic001G087600 Sobic001G346900 Sobic001G346900 Sobic003G217200--Sobic001G346900 Sobic003G217200--Sobic002G372500
Octagon: transcription factors


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