Gene annotation
Transcriptome id Sobic.007G018400.1
Synonym Sb07g001580
Functional annotation expressed protein
UniProt C5YM22
Pfam PF16910 PF06650 PF12624 PF16908 PF16909
Panther DB PTHR16166 PTHR16166:SF100
NCBI CDD KOG1809; Vacuolar protein sorting-associated protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24740 : Protein of unknown function (DUF1162)
RAP-DB (Rice) LOC_Os08g02350.1 : expressed protein
MaizeGDB (Corn) Zm00025a040255
Brachypodium PNT66536 , PNT66537 , PNT66538 , PNT66539 , KQJ94873
Barley HORVU7Hr1G075350.19 , HORVU7Hr1G075350.18 , HORVU7Hr1G075350.15 , HORVU7Hr1G075350.14 , HORVU7Hr1G075350.17 , HORVU7Hr1G075350.16 , HORVU7Hr1G075350.11 , HORVU7Hr1G075350.10 , HORVU7Hr1G075350.13 , HORVU7Hr1G075350.12 , HORVU7Hr1G075370.3 , HORVU7Hr1G075370.2 , HORVU7Hr1G075370.1 , HORVU7Hr1G075370.7 , HORVU7Hr1G075370.6 , HORVU7Hr1G075370.5 , HORVU7Hr1G075370.4 , HORVU7Hr1G075370.8 , HORVU7Hr1G075350.21 , HORVU7Hr1G075370.13 , HORVU7Hr1G075370.12 , HORVU7Hr1G075370.11 , HORVU7Hr1G075370.10 , HORVU7Hr1G075370.17 , HORVU7Hr1G075370.15 , HORVU7Hr1G075370.14 , HORVU7Hr1G075370.18 , HORVU7Hr1G075370.16 , HORVU7Hr1G075350.9 , HORVU7Hr1G075350.8 , HORVU7Hr1G075350.1 , HORVU7Hr1G075350.3 , HORVU7Hr1G075350.2 , HORVU7Hr1G075350.5 , HORVU7Hr1G075350.4 , HORVU7Hr1G075350.7 , HORVU7Hr1G075350.6 , HORVU7Hr1G075350.24 , HORVU7Hr1G075350.38 , HORVU7Hr1G075350.33 , HORVU7Hr1G075350.32 , HORVU7Hr1G075350.31 , HORVU7Hr1G075350.30 , HORVU7Hr1G075350.37 , HORVU7Hr1G075350.36 , HORVU7Hr1G075350.35 , HORVU7Hr1G075350.34 , HORVU7Hr1G075350.28 , HORVU7Hr1G075350.29 , HORVU7Hr1G075350.20 , HORVU7Hr1G075350.22 , HORVU7Hr1G075350.23 , HORVU7Hr1G075350.25 , HORVU7Hr1G075350.26 , HORVU7Hr1G075350.27
Wheat TraesCS7B02G217800 , TraesCS7D02G313700 , TraesCS7D02G313700 , TraesCS7B02G217800 , TraesCS7B02G217800 , TraesCS7D02G313700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
2 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
3 Sobic.002G154000 EDM2, putative, expressed -
4 Sobic.001G191700 expressed protein -
5 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
6 Sobic.001G400500 calpain, putative, expressed -
7 Sobic.003G043000 expressed protein -
8 Sobic.002G399800 PWWP domain containing protein, expressed -
9 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
10 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
11 Sobic.007G063000 expressed protein -
12 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
13 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
14 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
15 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
16 Sobic.009G256300 DNA binding protein, putative, expressed -
17 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
18 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
19 Sobic.003G296900 expressed protein -
20 Sobic.003G170700 expressed protein -


Gene co-expression network
sample Sobic007G018400 Sobic007G018400 Sobic006G032300 Sobic006G032300 Sobic007G018400--Sobic006G032300 Sobic001G542400 Sobic001G542400 Sobic007G018400--Sobic001G542400 Sobic002G154000 Sobic002G154000 Sobic007G018400--Sobic002G154000 Sobic001G191700 Sobic001G191700 Sobic007G018400--Sobic001G191700 Sobic001G299700 Sobic001G299700 Sobic007G018400--Sobic001G299700 Sobic001G400500 Sobic001G400500 Sobic007G018400--Sobic001G400500 Sobic003G043000 Sobic003G043000 Sobic007G018400--Sobic003G043000 Sobic002G399800 Sobic002G399800 Sobic007G018400--Sobic002G399800 Sobic004G053500 Sobic004G053500 Sobic007G018400--Sobic004G053500 Sobic002G335600 Sobic002G335600 Sobic006G032300--Sobic002G335600 Sobic008G088872 Sobic008G088872 Sobic006G032300--Sobic008G088872 Sobic006G032300--Sobic004G053500 Sobic006G032300--Sobic007G018400 Sobic001G273700 Sobic001G273700 Sobic006G032300--Sobic001G273700 Sobic002G042600 Sobic002G042600 Sobic006G032300--Sobic002G042600 Sobic006G032300--Sobic001G191700 Sobic009G131300 Sobic009G131300 Sobic006G032300--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic006G032300--Sobic002G429300 Sobic001G542400--Sobic001G299700 Sobic009G109200 Sobic009G109200 Sobic001G542400--Sobic009G109200 Sobic001G542400--Sobic001G400500 Sobic009G256300 Sobic009G256300 Sobic001G542400--Sobic009G256300 Sobic010G112100 Sobic010G112100 Sobic001G542400--Sobic010G112100 Sobic004G276400 Sobic004G276400 Sobic001G542400--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic001G542400--Sobic010G105200 Sobic005G008800 Sobic005G008800 Sobic001G542400--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G542400--Sobic008G001200 Sobic003G360400 Sobic003G360400 Sobic002G154000--Sobic003G360400 Sobic003G416700 Sobic003G416700 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic001G461400 Sobic001G461400 Sobic002G154000--Sobic001G461400 Sobic001G433800 Sobic001G433800 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic001G191700--Sobic001G299700 Sobic001G191700--Sobic001G542400 Sobic001G004400 Sobic001G004400 Sobic001G191700--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic001G191700--Sobic005G162500 Sobic001G191700--Sobic001G400500 Sobic001G191700--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic001G191700--Sobic004G248600 Sobic001G191700--Sobic006G032300 Sobic001G117200 Sobic001G117200 Sobic001G191700--Sobic001G117200 Sobic001G299700--Sobic001G542400 Sobic003G186000 Sobic003G186000 Sobic001G299700--Sobic003G186000 Sobic001G299700--Sobic010G105200 Sobic001G299700--Sobic001G191700 Sobic001G299700--Sobic009G109200 Sobic001G299700--Sobic005G008800 Sobic001G299700--Sobic008G001200 Sobic007G062800 Sobic007G062800 Sobic001G299700--Sobic007G062800 Sobic006G040500 Sobic006G040500 Sobic001G299700--Sobic006G040500 Sobic001G400500--Sobic001G542400 Sobic001G400500--Sobic009G109200 Sobic001G400500--Sobic010G112100 Sobic001G400500--Sobic005G008800 Sobic001G400500--Sobic001G063700 Sobic001G400500--Sobic009G256300 Sobic001G400500--Sobic010G105200 Sobic001G540400 Sobic001G540400 Sobic001G400500--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic001G400500--Sobic003G408600 Sobic004G265500 Sobic004G265500 Sobic003G043000--Sobic004G265500 Sobic001G308400 Sobic001G308400 Sobic003G043000--Sobic001G308400 Sobic003G296900 Sobic003G296900 Sobic003G043000--Sobic003G296900 Sobic004G357100 Sobic004G357100 Sobic003G043000--Sobic004G357100 Sobic003G241700 Sobic003G241700 Sobic003G043000--Sobic003G241700 Sobic009G228000 Sobic009G228000 Sobic003G043000--Sobic009G228000 SobicK028600 SobicK028600 Sobic003G043000--SobicK028600 Sobic003G163200 Sobic003G163200 Sobic003G043000--Sobic003G163200 Sobic002G227500 Sobic002G227500 Sobic003G043000--Sobic002G227500 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic003G260400 Sobic003G260400 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic002G399800--Sobic001G089600 Sobic001G393900 Sobic001G393900 Sobic002G399800--Sobic001G393900 Sobic002G399800--Sobic009G109200 Sobic002G401500 Sobic002G401500 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic004G053500--Sobic003G296900 Sobic004G053500--Sobic005G162500
Octagon: transcription factors


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