Gene annotation
Transcriptome id Sobic.002G372500.1
Synonym PSD, Sb02g039095
Functional annotation exportin 1, putative, expressed
UniProt C5XDZ8
Pfam PF08389
Panther DB PTHR15952
NCBI CDD -
KEGG Orthology K14288; exportin-T
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72560 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os07g42180.1 : exportin 1, putative, expressed
MaizeGDB (Corn) Zm00025a048739 , Zm00025a015193
Brachypodium PNT74773 , KQK15278 , KQK15279 , KQK15280
Barley HORVU2Hr1G031690.5 , HORVU2Hr1G031690.4 , HORVU2Hr1G031690.7 , HORVU2Hr1G031690.6 , HORVU2Hr1G031690.1 , HORVU2Hr1G031690.3 , HORVU2Hr1G031690.2 , HORVU2Hr1G031690.9 , HORVU2Hr1G031690.8 , HORVU2Hr1G031680.1 , HORVU2Hr1G031690.11 , HORVU2Hr1G031690.10 , HORVU2Hr1G031690.13 , HORVU2Hr1G031690.12 , HORVU2Hr1G031690.14
Wheat TraesCS2A02G170700 , TraesCS2B02G197100 , TraesCS2D02G178200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
2 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G052800 RST1, putative, expressed -
4 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
5 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
6 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
7 Sobic.010G174700 expressed protein -
8 Sobic.008G147200 tubulin, putative, expressed -
9 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
10 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
11 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
12 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
13 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
14 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
15 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
16 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
17 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
18 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
19 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
20 Sobic.004G030800 expressed protein -


Gene co-expression network
sample Sobic002G372500 Sobic002G372500 Sobic001G429600 Sobic001G429600 Sobic002G372500--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic002G372500--Sobic001G461300 Sobic003G052800 Sobic003G052800 Sobic002G372500--Sobic003G052800 Sobic001G373000 Sobic001G373000 Sobic002G372500--Sobic001G373000 Sobic006G269800 Sobic006G269800 Sobic002G372500--Sobic006G269800 Sobic001G451300 Sobic001G451300 Sobic002G372500--Sobic001G451300 Sobic010G174700 Sobic010G174700 Sobic002G372500--Sobic010G174700 Sobic008G147200 Sobic008G147200 Sobic002G372500--Sobic008G147200 Sobic003G199300 Sobic003G199300 Sobic002G372500--Sobic003G199300 Sobic001G429600--Sobic003G199300 Sobic001G429600--Sobic002G372500 Sobic009G101200 Sobic009G101200 Sobic001G429600--Sobic009G101200 Sobic009G211200 Sobic009G211200 Sobic001G429600--Sobic009G211200 Sobic004G019200 Sobic004G019200 Sobic001G429600--Sobic004G019200 Sobic006G125900 Sobic006G125900 Sobic001G429600--Sobic006G125900 Sobic006G193300 Sobic006G193300 Sobic001G429600--Sobic006G193300 Sobic001G052400 Sobic001G052400 Sobic001G429600--Sobic001G052400 Sobic001G429600--Sobic010G174700 Sobic001G461300--Sobic002G372500 Sobic001G461300--Sobic006G193300 Sobic001G408600 Sobic001G408600 Sobic001G461300--Sobic001G408600 Sobic006G002800 Sobic006G002800 Sobic001G461300--Sobic006G002800 Sobic009G234700 Sobic009G234700 Sobic001G461300--Sobic009G234700 Sobic002G371600 Sobic002G371600 Sobic001G461300--Sobic002G371600 Sobic007G089800 Sobic007G089800 Sobic001G461300--Sobic007G089800 Sobic001G461300--Sobic001G373000 Sobic004G224600 Sobic004G224600 Sobic001G461300--Sobic004G224600 Sobic003G052800--Sobic006G269800 Sobic002G145800 Sobic002G145800 Sobic003G052800--Sobic002G145800 Sobic002G430300 Sobic002G430300 Sobic003G052800--Sobic002G430300 Sobic003G052800--Sobic002G371600 Sobic003G052800--Sobic002G372500 Sobic001G051700 Sobic001G051700 Sobic003G052800--Sobic001G051700 Sobic002G043100 Sobic002G043100 Sobic003G052800--Sobic002G043100 Sobic003G052800--Sobic010G174700 Sobic003G217200 Sobic003G217200 Sobic003G052800--Sobic003G217200 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic006G269800--Sobic002G145800 Sobic006G269800--Sobic003G052800 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic010G262100 Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic006G036100 Sobic006G036100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic001G089600 Sobic001G089600 Sobic010G174700--Sobic001G089600 Sobic010G174700--Sobic001G052400 Sobic010G174700--Sobic002G145800 Sobic010G174700--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic010G174700--Sobic010G053600 Sobic001G453400 Sobic001G453400 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic002G071400 Sobic002G071400 Sobic003G199300--Sobic002G071400 Sobic008G049100 Sobic008G049100 Sobic003G199300--Sobic008G049100 Sobic004G085000 Sobic004G085000 Sobic003G199300--Sobic004G085000 Sobic010G205900 Sobic010G205900 Sobic003G199300--Sobic010G205900 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic009G246500 Sobic009G246500 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.