Gene annotation
Transcriptome id Sobic.001G373000.1
Synonym Sb01g035430
Functional annotation nucleoporin interacting component, putative, expressed
UniProt C5WZT7
Pfam PF04097
Panther DB PTHR11225
NCBI CDD -
KEGG Orthology K14309; NUP93, nuclear pore complex protein Nup93
Gene Ontology GO:0006810; transport GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT2G41620 : Nucleoporin interacting component (Nup93/Nic96-like) family protein
RAP-DB (Rice) LOC_Os03g22690.1 : nucleoporin interacting component, putative, expressed
MaizeGDB (Corn) Zm00025a002449
Brachypodium KQK21691
Barley HORVU5Hr1G021240.1
Wheat TraesCS4B02G153500 , TraesCS4B02G153500 , TraesCS4B02G153500 , TraesCS4B02G153500 , TraesCS4B02G153500 , TraesCS4B02G153500 , TraesCS4D02G154300 , TraesCS4D02G154300 , TraesCS4D02G154300 , TraesCS4D02G154300 , TraesCS4A02G141000 , TraesCS4A02G141000 , TraesCS4A02G141000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
2 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
3 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
4 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
5 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
6 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
7 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
9 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
10 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
11 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
12 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
13 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
14 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
15 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
16 Sobic.001G023800 expressed protein -
17 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
18 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
19 Sobic.010G186600 expressed protein -
20 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1


Gene co-expression network
sample Sobic001G373000 Sobic001G373000 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic006G033101 Sobic006G033101 Sobic009G104900--Sobic006G033101 Sobic009G104900--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic009G104900--Sobic002G132600 Sobic009G104900--Sobic002G126800 Sobic009G104900--Sobic004G038100 Sobic005G199200 Sobic005G199200 Sobic009G104900--Sobic005G199200 Sobic004G085000 Sobic004G085000 Sobic009G104900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic009G104900--Sobic001G373800 Sobic002G430300 Sobic002G430300 Sobic009G104900--Sobic002G430300 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic002G005000--Sobic001G373000 Sobic010G186600 Sobic010G186600 Sobic002G005000--Sobic010G186600 Sobic001G291800 Sobic001G291800 Sobic002G005000--Sobic001G291800 Sobic001G023800 Sobic001G023800 Sobic002G005000--Sobic001G023800 Sobic001G052400 Sobic001G052400 Sobic002G005000--Sobic001G052400 Sobic004G307500 Sobic004G307500 Sobic002G005000--Sobic004G307500 Sobic008G147200 Sobic008G147200 Sobic002G005000--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic002G005000--Sobic004G340400 Sobic002G005000--Sobic001G013300 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic003G361400--Sobic003G259600 Sobic003G361400--Sobic001G373000 Sobic002G219900 Sobic002G219900 Sobic003G361400--Sobic002G219900 Sobic003G361400--Sobic004G038100 Sobic003G361400--Sobic001G013300 Sobic002G043000 Sobic002G043000 Sobic003G361400--Sobic002G043000 Sobic001G033900 Sobic001G033900 Sobic003G361400--Sobic001G033900 Sobic002G372500 Sobic002G372500 Sobic003G361400--Sobic002G372500 Sobic003G361400--Sobic003G360300 Sobic010G188000--Sobic001G373000 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic003G432300 Sobic003G432300 Sobic002G126800--Sobic003G432300 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic002G126800--Sobic009G104900 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic005G028100--Sobic002G126800 Sobic005G028100--Sobic001G373000 Sobic005G028100--Sobic002G132600
Octagon: transcription factors


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