Gene annotation
Transcriptome id Sobic.010G205900.1
Synonym Sb10g025320
Functional annotation WD repeat-containing protein, putative, expressed
UniProt C5Z6Q2
Pfam PF00400 PF04192
Panther DB PTHR22840
NCBI CDD -
KEGG Orthology K14554; UTP21, U3 small nucleolar RNA-associated protein 21
Gene Ontology GO:0005515; protein binding GO:0006364rRNA processing


Orthologs (automatic annotation)
TAIR AT4G04940 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os06g43690.1 : WD repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051389 , Zm00025a014117
Brachypodium KQK16785
Barley HORVU7Hr1G115460.9 , HORVU7Hr1G115460.6 , HORVU7Hr1G115460.7 , HORVU7Hr1G115460.5 , HORVU7Hr1G115460.4 , HORVU7Hr1G115460.3 , HORVU7Hr1G115460.1 , HORVU7Hr1G115460.8 , HORVU7Hr1G115460.2 , HORVU7Hr1G115440.1 , HORVU7Hr1G115460.14 , HORVU7Hr1G115460.15 , HORVU7Hr1G115460.16 , HORVU7Hr1G115460.17 , HORVU7Hr1G115460.10 , HORVU7Hr1G115460.11 , HORVU7Hr1G115460.12 , HORVU7Hr1G115460.13 , HORVU7Hr1G115460.18 , HORVU7Hr1G115460.19 , HORVU7Hr1G115460.20
Wheat TraesCS7B02G433500 , TraesCS7D02G507400 , TraesCS7D02G507400 , TraesCS7A02G517200
Populus PNT30392


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cDNA sequences
Sobic.010G205900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
2 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
3 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
4 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
5 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
6 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
7 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
8 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
9 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
10 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
11 Sobic.006G225400 zinc finger protein, putative, expressed -
12 Sobic.002G423400 PPR repeat containing protein, expressed -
13 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
14 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
15 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
16 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
17 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
18 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
19 Sobic.010G224700 - K17680: twinkle protein
20 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase


Gene co-expression network
sample Sobic010G205900 Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic010G205900--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic010G205900--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic003G432300 Sobic003G432300 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic005G098800--Sobic003G123200 Sobic005G098800--Sobic008G049100 Sobic005G098800--Sobic010G205900 Sobic005G098800--Sobic009G246500 Sobic005G098800--Sobic008G163500 Sobic005G098800--Sobic002G423400 Sobic005G098800--Sobic005G028100 Sobic005G098800--Sobic010G224700 Sobic004G215900 Sobic004G215900 Sobic005G098800--Sobic004G215900 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic001G024000--Sobic004G215900 Sobic001G024000--Sobic010G205900 Sobic008G111600 Sobic008G111600 Sobic001G024000--Sobic008G111600 Sobic001G024000--Sobic009G246500 Sobic008G068100 Sobic008G068100 Sobic001G024000--Sobic008G068100 Sobic003G412000 Sobic003G412000 Sobic001G024000--Sobic003G412000 Sobic001G024000--Sobic008G049100 Sobic001G024000--Sobic003G123200 Sobic002G003300 Sobic002G003300 Sobic001G024000--Sobic002G003300
Octagon: transcription factors


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