Gene annotation
Transcriptome id Sobic.006G221600.1,Sobic.006G221600.2
Synonym Sb06g029102
Functional annotation expressed protein
UniProt C5YG68 , A0A1Z5RF42
Pfam PF16201 PF16201 PF11707
Panther DB PTHR13500
NCBI CDD KOG1791; Uncharacterized conserved protein
KEGG Orthology K14861; nucleolar pre-ribosomal-associated protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27010 : -
RAP-DB (Rice) LOC_Os04g53380.1 : expressed protein
MaizeGDB (Corn) Zm00025a009709 , Zm00025a038410 , Zm00025a000834
Brachypodium KQJ99980
Barley HORVU2Hr1G102140.16 , HORVU2Hr1G102140.14 , HORVU2Hr1G102140.15 , HORVU2Hr1G102140.12 , HORVU2Hr1G102140.13 , HORVU2Hr1G102140.10 , HORVU2Hr1G102140.11 , HORVU2Hr1G102140.4 , HORVU2Hr1G102140.5 , HORVU2Hr1G102140.6 , HORVU2Hr1G102140.7 , HORVU2Hr1G102140.1 , HORVU2Hr1G102140.2 , HORVU2Hr1G102140.3 , HORVU2Hr1G102140.8 , HORVU2Hr1G102140.9
Wheat TraesCS2D02G437700 , TraesCS2D02G128100 , TraesCS2A02G441200 , TraesCS2B02G147500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
2 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
3 Sobic.010G114900 expressed protein -
4 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
5 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
6 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
7 Sobic.010G017900 NUC153 domain containing protein, expressed K14788: NOL10, ribosome biogenesis protein ENP2
8 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
9 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
10 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
11 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
12 Sobic.001G335300 NOC3 - Putative nucleolar complex subunit 3, expressed K14834: nucleolar complex protein 3
13 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
14 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
15 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
16 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
17 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
18 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
19 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
20 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2


Gene co-expression network
sample Sobic006G221600 Sobic006G221600 Sobic009G217200 Sobic009G217200 Sobic006G221600--Sobic009G217200 Sobic002G071400 Sobic002G071400 Sobic006G221600--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic006G221600--Sobic010G114900 Sobic008G049100 Sobic008G049100 Sobic006G221600--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic006G221600--Sobic003G199300 Sobic002G234300 Sobic002G234300 Sobic006G221600--Sobic002G234300 Sobic010G017900 Sobic010G017900 Sobic006G221600--Sobic010G017900 Sobic010G205900 Sobic010G205900 Sobic006G221600--Sobic010G205900 Sobic007G056200 Sobic007G056200 Sobic006G221600--Sobic007G056200 Sobic003G156500 Sobic003G156500 Sobic009G217200--Sobic003G156500 Sobic009G217200--Sobic006G221600 Sobic010G003400 Sobic010G003400 Sobic009G217200--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic009G217200--Sobic001G453400 Sobic009G217200--Sobic002G234300 Sobic009G217200--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic009G217200--Sobic009G246500 Sobic009G217200--Sobic002G071400 Sobic009G217200--Sobic010G114900 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic003G123200 Sobic003G123200 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic010G114900--Sobic004G085000 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic001G052400 Sobic001G052400 Sobic010G114900--Sobic001G052400 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic002G234300--Sobic009G217200 Sobic002G234300--Sobic001G453400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic002G234300--Sobic003G199300 Sobic006G086600 Sobic006G086600 Sobic010G017900--Sobic006G086600 Sobic010G017900--Sobic006G221600 Sobic010G017900--Sobic010G003400 Sobic004G027500 Sobic004G027500 Sobic010G017900--Sobic004G027500 Sobic009G101200 Sobic009G101200 Sobic010G017900--Sobic009G101200 Sobic010G017900--Sobic007G077900 Sobic010G017900--Sobic009G246500 Sobic010G017900--Sobic001G453400 Sobic010G017900--Sobic002G071400 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic007G056200--Sobic002G071400 Sobic007G056200--Sobic003G199300 Sobic006G128400 Sobic006G128400 Sobic007G056200--Sobic006G128400 Sobic007G056200--Sobic006G221600 Sobic007G056200--Sobic010G003400 Sobic003G059400 Sobic003G059400 Sobic007G056200--Sobic003G059400 Sobic007G056200--Sobic008G049100 Sobic007G056200--Sobic009G217200 Sobic007G056200--Sobic001G110600
Octagon: transcription factors


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