Gene annotation
Transcriptome id Sobic.007G056200.2,Sobic.007G056200.1
Synonym Sb07g004530
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1Z5R8A7 , A0A1B6PFY7
Pfam PF10350
Panther DB PTHR14387 PTHR14387:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55160 : -
RAP-DB (Rice) LOC_Os08g07290.2 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a055033
Brachypodium KQJ95224
Barley HORVU4Hr1G083860.2 , HORVU4Hr1G083860.9 , HORVU4Hr1G083860.8 , HORVU4Hr1G083860.5 , HORVU4Hr1G083860.4 , HORVU4Hr1G083860.7 , HORVU4Hr1G083860.6 , HORVU4Hr1G083860.1 , HORVU4Hr1G083860.3 , HORVU4Hr1G083860.11 , HORVU4Hr1G083860.10 , HORVU4Hr1G083860.13 , HORVU4Hr1G083860.12 , HORVU4Hr1G083860.14
Wheat TraesCS5A02G509700 , TraesCS4D02G336400 , TraesCS4B02G340300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
2 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
3 Sobic.006G128400 PPR repeat containing protein, expressed -
4 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
5 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
6 Sobic.003G059400 HEAT repeat family protein, putative, expressed K14550: UTP10, U3 small nucleolar RNA-associated protein 10
7 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
8 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
9 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
10 Sobic.001G004400 - K14290: XPO1, exportin-1
11 Sobic.010G174700 expressed protein -
12 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
13 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
14 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
15 Sobic.004G030800 expressed protein -
16 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
17 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
18 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
19 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
20 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial


Gene co-expression network
sample Sobic007G056200 Sobic007G056200 Sobic002G071400 Sobic002G071400 Sobic007G056200--Sobic002G071400 Sobic003G199300 Sobic003G199300 Sobic007G056200--Sobic003G199300 Sobic006G128400 Sobic006G128400 Sobic007G056200--Sobic006G128400 Sobic006G221600 Sobic006G221600 Sobic007G056200--Sobic006G221600 Sobic010G003400 Sobic010G003400 Sobic007G056200--Sobic010G003400 Sobic003G059400 Sobic003G059400 Sobic007G056200--Sobic003G059400 Sobic008G049100 Sobic008G049100 Sobic007G056200--Sobic008G049100 Sobic009G217200 Sobic009G217200 Sobic007G056200--Sobic009G217200 Sobic001G110600 Sobic001G110600 Sobic007G056200--Sobic001G110600 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G234300 Sobic002G234300 Sobic002G071400--Sobic002G234300 Sobic010G205900 Sobic010G205900 Sobic002G071400--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic002G071400--Sobic009G246500 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic003G123200 Sobic003G123200 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic006G221600--Sobic009G217200 Sobic006G221600--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic006G221600--Sobic010G114900 Sobic006G221600--Sobic008G049100 Sobic006G221600--Sobic003G199300 Sobic006G221600--Sobic002G234300 Sobic010G017900 Sobic010G017900 Sobic006G221600--Sobic010G017900 Sobic006G221600--Sobic010G205900 Sobic006G221600--Sobic007G056200 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic001G453400 Sobic001G453400 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic003G059400--Sobic003G260400 Sobic001G191700 Sobic001G191700 Sobic003G059400--Sobic001G191700 Sobic003G059400--Sobic010G003400 Sobic004G019200 Sobic004G019200 Sobic003G059400--Sobic004G019200 Sobic003G059400--Sobic004G030800 Sobic010G053600 Sobic010G053600 Sobic003G059400--Sobic010G053600 Sobic010G079500 Sobic010G079500 Sobic003G059400--Sobic010G079500 Sobic003G059400--Sobic001G004400 Sobic003G059400--Sobic004G085000 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic003G156500 Sobic003G156500 Sobic009G217200--Sobic003G156500 Sobic009G217200--Sobic006G221600 Sobic009G217200--Sobic010G003400 Sobic009G217200--Sobic001G453400 Sobic009G217200--Sobic002G234300 Sobic009G217200--Sobic008G049100 Sobic009G217200--Sobic009G246500 Sobic009G217200--Sobic002G071400 Sobic009G217200--Sobic010G114900 Sobic007G054800 Sobic007G054800 Sobic001G110600--Sobic007G054800 Sobic001G110600--Sobic001G004400 Sobic003G221400 Sobic003G221400 Sobic001G110600--Sobic003G221400 Sobic001G493700 Sobic001G493700 Sobic001G110600--Sobic001G493700 Sobic001G110600--Sobic001G191700 Sobic005G162500 Sobic005G162500 Sobic001G110600--Sobic005G162500 Sobic003G233400 Sobic003G233400 Sobic001G110600--Sobic003G233400 Sobic008G085300 Sobic008G085300 Sobic001G110600--Sobic008G085300 Sobic001G287500 Sobic001G287500 Sobic001G110600--Sobic001G287500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.