Gene annotation
Transcriptome id Sobic.001G224200.1
Synonym Sb01g019710, NUC-L2, PARLL1, ATNUC-L2
Functional annotation nucleolin, putative, expressed
UniProt C5WZC1
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF497
NCBI CDD KOG4210; Nuclear localization sequence binding protein
KEGG Orthology K11294; NCL, nucleolin
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G18610 : nucleolin like 2
RAP-DB (Rice) LOC_Os04g52960.1 : nucleolin, putative, expressed
MaizeGDB (Corn) Zm00025a006662
Brachypodium KQJ84675 , KQJ84664 , KQJ84662 , KQJ84663
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G224200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
2 Sobic.006G128400 PPR repeat containing protein, expressed -
3 Sobic.001G207200 MEE12, putative, expressed -
4 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
6 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
7 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
8 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
9 Sobic.004G030800 expressed protein -
10 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
11 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
12 Sobic.002G092050 - -
13 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
14 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
15 Sobic.005G012700 expressed protein -
16 Sobic.003G193200 expressed protein -
17 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
18 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
19 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
20 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1


Gene co-expression network
sample Sobic001G224200 Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic001G224200--Sobic008G165900 Sobic006G128400 Sobic006G128400 Sobic001G224200--Sobic006G128400 Sobic001G207200 Sobic001G207200 Sobic001G224200--Sobic001G207200 Sobic007G075800 Sobic007G075800 Sobic001G224200--Sobic007G075800 Sobic002G238000 Sobic002G238000 Sobic001G224200--Sobic002G238000 Sobic001G119600 Sobic001G119600 Sobic001G224200--Sobic001G119600 Sobic003G332900 Sobic003G332900 Sobic001G224200--Sobic003G332900 Sobic001G501400 Sobic001G501400 Sobic001G224200--Sobic001G501400 Sobic004G030800 Sobic004G030800 Sobic001G224200--Sobic004G030800 Sobic008G165900--Sobic001G224200 Sobic008G165900--Sobic003G332900 Sobic008G165900--Sobic002G238000 Sobic008G165900--Sobic006G128400 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic006G128400--Sobic001G224200 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic010G211500 Sobic010G211500 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic009G036300 Sobic009G036300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G207200--Sobic001G224200 Sobic007G075800--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic007G075800--Sobic004G030800 Sobic007G075800--Sobic008G165900 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic006G125900 Sobic006G125900 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic002G238000--Sobic001G224200 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic001G119600--Sobic002G262100 Sobic001G119600--Sobic010G224700 Sobic003G123200 Sobic003G123200 Sobic001G119600--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic001G119600--Sobic003G425100 Sobic001G119600--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic006G198600 Sobic006G198600 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic003G332900--Sobic008G165900 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic003G332900--Sobic006G128400 Sobic001G358600 Sobic001G358600 Sobic001G501400--Sobic001G358600 Sobic001G501400--Sobic006G128400 Sobic003G156500 Sobic003G156500 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic001G501400--Sobic006G125900 Sobic001G501400--Sobic008G049100 Sobic010G003400 Sobic010G003400 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic004G030800--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic004G030800--Sobic001G052400 Sobic004G030800--Sobic004G025800 Sobic004G030800--Sobic008G051200 Sobic004G030800--Sobic007G075800 Sobic003G260400 Sobic003G260400 Sobic004G030800--Sobic003G260400 Sobic009G101200 Sobic009G101200 Sobic004G030800--Sobic009G101200 Sobic010G053600 Sobic010G053600 Sobic004G030800--Sobic010G053600 Sobic001G004400 Sobic001G004400 Sobic004G030800--Sobic001G004400
Octagon: transcription factors


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