Gene annotation
Transcriptome id Sobic.001G501300.1
Synonym Sb01g046840
Functional annotation cell division control protein 48 homolog E, putative, expressed
UniProt C5WXV4
Pfam PF02933 PF07724 PF05496 PF02359
Panther DB PTHR23077 PTHR23077:SF82
NCBI CDD -
KEGG Orthology K13525; VCP, transitional endoplasmic reticulum ATPase
Gene Ontology GO:0005524; ATP binding GO:0009378four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT5G03340 : ATPase, AAA-type, CDC48 protein
RAP-DB (Rice) LOC_Os03g05730.1 : cell division control protein 48 homolog E, putative, expressed
MaizeGDB (Corn) Zm00025a000692 , Zm00025a017720 , Zm00025a006788 , Zm00025a053428
Brachypodium KQK23612 , KQK23611
Barley HORVU4Hr1G071960.1 , HORVU4Hr1G071960.3 , HORVU4Hr1G071960.2 , HORVU4Hr1G071960.5 , HORVU4Hr1G071960.4 , HORVU4Hr1G071960.7 , HORVU4Hr1G071960.6 , HORVU4Hr1G071960.9 , HORVU4Hr1G071960.8 , HORVU5Hr1G006180.29 , HORVU5Hr1G006180.28 , HORVU5Hr1G006180.23 , HORVU5Hr1G006180.21 , HORVU5Hr1G006180.20 , HORVU5Hr1G006180.27 , HORVU5Hr1G006180.26 , HORVU5Hr1G006180.25 , HORVU5Hr1G006180.24 , HORVU5Hr1G006180.30 , HORVU5Hr1G006180.31 , HORVU5Hr1G006180.32 , HORVU5Hr1G006180.34 , HORVU5Hr1G006180.35 , HORVU5Hr1G006180.36 , HORVU5Hr1G006180.37 , HORVU5Hr1G006180.1 , HORVU5Hr1G006180.3 , HORVU5Hr1G006180.4 , HORVU5Hr1G006180.5 , HORVU5Hr1G006180.6 , HORVU4Hr1G072010.1 , HORVU1Hr1G049910.4 , HORVU5Hr1G006180.13 , HORVU5Hr1G006180.10 , HORVU5Hr1G006180.11 , HORVU5Hr1G006180.16 , HORVU5Hr1G006180.14 , HORVU5Hr1G006180.15 , HORVU5Hr1G006180.18 , HORVU5Hr1G006180.19 , HORVU1Hr1G049910.2 , HORVU1Hr1G049910.3 , HORVU1Hr1G049910.1 , HORVU5Hr1G006180.7 , HORVU4Hr1G071960.10 , HORVU4Hr1G072010.4 , HORVU4Hr1G072010.5 , HORVU4Hr1G072010.6 , HORVU4Hr1G072010.7 , HORVU4Hr1G072010.2 , HORVU4Hr1G072010.3 , HORVU5Hr1G006180.49 , HORVU5Hr1G006180.40 , HORVU5Hr1G006180.43 , HORVU5Hr1G006180.42 , HORVU5Hr1G006180.47 , HORVU5Hr1G006180.46 , HORVU5Hr1G006180.50 , HORVU0Hr1G038060.3 , HORVU0Hr1G038060.2 , HORVU0Hr1G038060.1
Wheat TraesCS4D02G267800 , TraesCS4D02G267800 , TraesCS4A02G035500 , TraesCS4B02G268200 , TraesCS4A02G035700 , TraesCS4A02G035700 , TraesCS4A02G035700 , TraesCS4B02G268400 , TraesCS1A02G222100 , TraesCS4D02G267600 , TraesCS4D02G267600 , TraesCS1B02G192400
Populus PNT10210 , PNS98694 , PNS98693 , PNT10209 , PNT10208 , PNT31281 , PNT31282 , PNT31283


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cDNA sequences
Sobic.001G501300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
2 Sobic.001G207200 MEE12, putative, expressed -
3 Sobic.004G262700 - -
4 Sobic.010G176300 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
5 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
6 Sobic.002G167500 expressed protein -
7 Sobic.005G026000 expressed protein -
8 Sobic.003G193200 expressed protein -
9 Sobic.002G031700 - -
10 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
11 Sobic.002G404200 F-box domain containing protein, expressed -
12 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
13 Sobic.007G029500 expressed protein -
14 Sobic.002G339300 myosin-Vb, putative, expressed K10357: myosin V
15 Sobic.002G428800 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
16 Sobic.001G120500 toc64, putative, expressed -
17 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
18 Sobic.004G086700 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
19 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
20 Sobic.009G193500 AGAP007115-PA, putative, expressed -


Gene co-expression network
sample Sobic001G501300 Sobic001G501300 Sobic010G100800 Sobic010G100800 Sobic001G501300--Sobic010G100800 Sobic001G207200 Sobic001G207200 Sobic001G501300--Sobic001G207200 Sobic004G262700 Sobic004G262700 Sobic001G501300--Sobic004G262700 Sobic010G176300 Sobic010G176300 Sobic001G501300--Sobic010G176300 Sobic008G165900 Sobic008G165900 Sobic001G501300--Sobic008G165900 Sobic002G167500 Sobic002G167500 Sobic001G501300--Sobic002G167500 Sobic005G026000 Sobic005G026000 Sobic001G501300--Sobic005G026000 Sobic003G193200 Sobic003G193200 Sobic001G501300--Sobic003G193200 Sobic002G031700 Sobic002G031700 Sobic001G501300--Sobic002G031700 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic010G100800--Sobic003G193200 Sobic010G211500 Sobic010G211500 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic009G036300 Sobic009G036300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic003G332900 Sobic003G332900 Sobic001G207200--Sobic003G332900 Sobic001G224200 Sobic001G224200 Sobic001G207200--Sobic001G224200 Sobic002G339300 Sobic002G339300 Sobic004G262700--Sobic002G339300 Sobic001G396000 Sobic001G396000 Sobic004G262700--Sobic001G396000 Sobic004G262700--Sobic001G501300 Sobic004G262700--Sobic005G026000 Sobic004G026500 Sobic004G026500 Sobic004G262700--Sobic004G026500 Sobic009G193500 Sobic009G193500 Sobic004G262700--Sobic009G193500 Sobic001G124100 Sobic001G124100 Sobic004G262700--Sobic001G124100 Sobic008G172300 Sobic008G172300 Sobic004G262700--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic004G262700--Sobic002G345700 Sobic010G176300--Sobic001G501300 Sobic003G212100 Sobic003G212100 Sobic010G176300--Sobic003G212100 Sobic001G276200 Sobic001G276200 Sobic010G176300--Sobic001G276200 Sobic002G428800 Sobic002G428800 Sobic010G176300--Sobic002G428800 Sobic003G134000 Sobic003G134000 Sobic010G176300--Sobic003G134000 Sobic006G089400 Sobic006G089400 Sobic010G176300--Sobic006G089400 Sobic001G070700 Sobic001G070700 Sobic010G176300--Sobic001G070700 Sobic004G318000 Sobic004G318000 Sobic010G176300--Sobic004G318000 Sobic010G176300--Sobic010G100800 Sobic008G165900--Sobic001G224200 Sobic008G165900--Sobic003G332900 Sobic002G238000 Sobic002G238000 Sobic008G165900--Sobic002G238000 Sobic006G128400 Sobic006G128400 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic008G165900--Sobic010G100800 Sobic008G165900--Sobic001G501300 Sobic008G165900--Sobic002G031700 Sobic003G340600 Sobic003G340600 Sobic002G167500--Sobic003G340600 Sobic002G167500--Sobic008G172300 Sobic003G311900 Sobic003G311900 Sobic002G167500--Sobic003G311900 Sobic002G131500 Sobic002G131500 Sobic002G167500--Sobic002G131500 Sobic002G167500--Sobic005G026000 Sobic002G167500--Sobic004G026500 Sobic010G265300 Sobic010G265300 Sobic002G167500--Sobic010G265300 Sobic002G167500--Sobic001G300100 Sobic001G136800 Sobic001G136800 Sobic002G167500--Sobic001G136800 Sobic005G026000--Sobic010G100800 Sobic005G026000--Sobic003G311900 Sobic005G026000--Sobic004G262700 Sobic005G026000--Sobic002G167500 Sobic004G344000 Sobic004G344000 Sobic005G026000--Sobic004G344000 Sobic005G026000--Sobic001G124100 Sobic003G264800 Sobic003G264800 Sobic005G026000--Sobic003G264800 Sobic001G049500 Sobic001G049500 Sobic005G026000--Sobic001G049500 Sobic003G107500 Sobic003G107500 Sobic005G026000--Sobic003G107500 Sobic003G193200--Sobic002G339300 Sobic002G418600 Sobic002G418600 Sobic003G193200--Sobic002G418600 Sobic006G119400 Sobic006G119400 Sobic003G193200--Sobic006G119400 Sobic003G193200--Sobic010G100800 Sobic003G193200--Sobic009G052700 Sobic003G193200--Sobic001G501300 Sobic003G193200--Sobic005G026000 Sobic003G193200--Sobic001G124100 Sobic003G193200--Sobic002G031700 Sobic002G031700--Sobic007G075800 Sobic002G155000 Sobic002G155000 Sobic002G031700--Sobic002G155000 Sobic002G031700--Sobic010G100800 Sobic002G031700--Sobic008G165900 Sobic002G031700--Sobic003G134000 Sobic002G031700--Sobic001G501300 Sobic007G097400 Sobic007G097400 Sobic002G031700--Sobic007G097400 Sobic002G031700--Sobic003G193200 Sobic002G031700--Sobic001G207200
Octagon: transcription factors


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