Gene annotation
Transcriptome id Sobic.002G404200.2,Sobic.002G404200.3,Sobic.002G404200.1
Synonym Sb02g041860, SKIP5, SKP5
Functional annotation F-box domain containing protein, expressed
UniProt A0A1W0W7Q8 , A0A1W0W7T7 , C5X4R2
Pfam PF12937
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G54480 : SKP1/ASK-interacting protein 5
RAP-DB (Rice) LOC_Os07g46555.1 : F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049037
Brachypodium KQK14847
Barley HORVU2Hr1G022660.6 , HORVU2Hr1G022660.1 , HORVU2Hr1G022660.2 , HORVU2Hr1G022660.3 , HORVU2Hr1G022660.4 , HORVU2Hr1G022660.5
Wheat TraesCS2B02G151200 , TraesCS2A02G129100
Populus PNT52330 , PNS22326 , PNS22327


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G300100 - -
2 Sobic.002G142066 - K18045: SIW14, tyrosine-protein phosphatase SIW14
3 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
4 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
5 Sobic.008G193300 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@"OsSUT2(Ortholog in rice:Eom et al., 2011)"(PubMedID : 31659914)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
6 Sobic.010G086900 OsFBX187 - F-box domain containing protein, expressed -
7 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
8 Sobic.001G279900 CDPK - calmodulin-binding receptor-like cytoplasmic kinase 3(PubMedID : 31721651)@wall-associated receptor kinase-like 20 precursor, putative, expressed -
9 Sobic.009G004800 - -
10 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
11 Sobic.001G207200 MEE12, putative, expressed -
12 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
13 Sobic.001G069600 ad-003, putative, expressed K16219: NTMT1, METTL11A, protein N-terminal methyltransferase
14 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
15 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
16 Sobic.008G063200 expressed protein -
17 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
18 Sobic.002G168500 NBS-LRR type disease resistance protein, putative, expressed -
19 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
20 Sobic.006G214700 APO, putative, expressed -


Gene co-expression network
sample Sobic002G404200 Sobic002G404200 Sobic001G300100 Sobic001G300100 Sobic002G404200--Sobic001G300100 Sobic002G142066 Sobic002G142066 Sobic002G404200--Sobic002G142066 Sobic010G100800 Sobic010G100800 Sobic002G404200--Sobic010G100800 Sobic007G029100 Sobic007G029100 Sobic002G404200--Sobic007G029100 Sobic008G193300 Sobic008G193300 Sobic002G404200--Sobic008G193300 Sobic010G086900 Sobic010G086900 Sobic002G404200--Sobic010G086900 Sobic001G341800 Sobic001G341800 Sobic002G404200--Sobic001G341800 Sobic001G279900 Sobic001G279900 Sobic002G404200--Sobic001G279900 Sobic009G004800 Sobic009G004800 Sobic002G404200--Sobic009G004800 Sobic008G172300 Sobic008G172300 Sobic001G300100--Sobic008G172300 Sobic007G110700 Sobic007G110700 Sobic001G300100--Sobic007G110700 Sobic001G300100--Sobic010G100800 Sobic002G339300 Sobic002G339300 Sobic001G300100--Sobic002G339300 Sobic001G300100--Sobic002G404200 Sobic009G193500 Sobic009G193500 Sobic001G300100--Sobic009G193500 Sobic001G300100--Sobic010G086900 Sobic001G261900 Sobic001G261900 Sobic001G300100--Sobic001G261900 Sobic004G262700 Sobic004G262700 Sobic001G300100--Sobic004G262700 Sobic002G142066--Sobic002G404200 Sobic004G224500 Sobic004G224500 Sobic002G142066--Sobic004G224500 Sobic009G141400 Sobic009G141400 Sobic002G142066--Sobic009G141400 Sobic008G063200 Sobic008G063200 Sobic002G142066--Sobic008G063200 Sobic006G214700 Sobic006G214700 Sobic002G142066--Sobic006G214700 Sobic003G179400 Sobic003G179400 Sobic002G142066--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic002G142066--Sobic001G006000 Sobic003G208300 Sobic003G208300 Sobic002G142066--Sobic003G208300 Sobic002G142066--Sobic008G193300 Sobic001G501300 Sobic001G501300 Sobic010G100800--Sobic001G501300 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic010G100800--Sobic001G300100 Sobic010G100800--Sobic002G404200 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic007G029100--Sobic002G404200 Sobic009G029700 Sobic009G029700 Sobic007G029100--Sobic009G029700 Sobic001G380500 Sobic001G380500 Sobic007G029100--Sobic001G380500 Sobic010G113000 Sobic010G113000 Sobic007G029100--Sobic010G113000 Sobic010G080300 Sobic010G080300 Sobic007G029100--Sobic010G080300 Sobic007G029100--Sobic001G341800 Sobic002G281800 Sobic002G281800 Sobic007G029100--Sobic002G281800 Sobic007G073700 Sobic007G073700 Sobic007G029100--Sobic007G073700 Sobic005G064800 Sobic005G064800 Sobic007G029100--Sobic005G064800 Sobic008G193300--Sobic008G063200 Sobic008G193300--Sobic010G080300 Sobic008G193300--Sobic002G404200 Sobic004G265900 Sobic004G265900 Sobic008G193300--Sobic004G265900 Sobic008G193300--Sobic006G214700 Sobic001G450600 Sobic001G450600 Sobic008G193300--Sobic001G450600 Sobic009G079950 Sobic009G079950 Sobic008G193300--Sobic009G079950 Sobic008G193300--Sobic002G142066 Sobic004G144000 Sobic004G144000 Sobic008G193300--Sobic004G144000 Sobic001G249400 Sobic001G249400 Sobic010G086900--Sobic001G249400 Sobic009G046800 Sobic009G046800 Sobic010G086900--Sobic009G046800 Sobic010G086900--Sobic010G100800 Sobic002G378000 Sobic002G378000 Sobic010G086900--Sobic002G378000 Sobic010G086900--Sobic001G300100 Sobic004G003900 Sobic004G003900 Sobic010G086900--Sobic004G003900 Sobic010G086900--Sobic002G404200 Sobic008G067100 Sobic008G067100 Sobic010G086900--Sobic008G067100 Sobic004G019500 Sobic004G019500 Sobic010G086900--Sobic004G019500 Sobic009G190800 Sobic009G190800 Sobic001G341800--Sobic009G190800 Sobic001G341800--Sobic002G404200 Sobic001G341800--Sobic007G029100 Sobic001G202500 Sobic001G202500 Sobic001G341800--Sobic001G202500 Sobic009G036300 Sobic009G036300 Sobic001G341800--Sobic009G036300 Sobic001G324400 Sobic001G324400 Sobic001G341800--Sobic001G324400 Sobic001G341800--Sobic002G281800 Sobic007G168200 Sobic007G168200 Sobic001G341800--Sobic007G168200 Sobic001G367500 Sobic001G367500 Sobic001G341800--Sobic001G367500 Sobic002G168500 Sobic002G168500 Sobic001G279900--Sobic002G168500 Sobic001G279900--Sobic002G404200 Sobic001G402500 Sobic001G402500 Sobic001G279900--Sobic001G402500 Sobic009G162600 Sobic009G162600 Sobic001G279900--Sobic009G162600 Sobic001G279900--Sobic008G172300 Sobic003G378400 Sobic003G378400 Sobic001G279900--Sobic003G378400 Sobic001G279900--Sobic010G100800 Sobic004G026500 Sobic004G026500 Sobic001G279900--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G279900--Sobic001G124100 Sobic002G163700 Sobic002G163700 Sobic009G004800--Sobic002G163700 Sobic009G004800--Sobic009G036300 Sobic003G330100 Sobic003G330100 Sobic009G004800--Sobic003G330100 Sobic001G388400 Sobic001G388400 Sobic009G004800--Sobic001G388400 Sobic003G310100 Sobic003G310100 Sobic009G004800--Sobic003G310100 Sobic010G028000 Sobic010G028000 Sobic009G004800--Sobic010G028000 Sobic009G004800--Sobic009G046800 Sobic009G234200 Sobic009G234200 Sobic009G004800--Sobic009G234200 Sobic009G004800--Sobic001G450600
Octagon: transcription factors


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