Gene annotation
Transcriptome id Sobic.009G052700.3,Sobic.009G052700.1,Sobic.009G052700.2
Synonym Sb09g004480
Functional annotation 4Fe-4S binding domain containing protein, expressed
UniProt A0A1B6P6N6 , C5Z0L5
Pfam PF12617
Panther DB PTHR19248 PTHR19248:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os05g06510.1 : 4Fe-4S binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038311
Brachypodium KQK07375
Barley HORVU1Hr1G023320.5 , HORVU1Hr1G023320.4 , HORVU1Hr1G023320.7 , HORVU1Hr1G023320.6 , HORVU1Hr1G023320.1 , HORVU1Hr1G023320.3 , HORVU1Hr1G023320.2 , HORVU1Hr1G023320.9 , HORVU1Hr1G023320.8 , HORVU1Hr1G023320.11 , HORVU1Hr1G023320.10 , HORVU1Hr1G023320.13 , HORVU1Hr1G023320.12 , HORVU1Hr1G023320.15 , HORVU1Hr1G023320.14 , HORVU1Hr1G023320.17 , HORVU1Hr1G023320.16
Wheat TraesCS1A02G106500 , TraesCS1D02G108500 , TraesCS1A02G106500 , TraesCS1B02G123900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G334100 zinc finger family protein, putative, expressed -
2 Sobic.006G214700 APO, putative, expressed -
3 Sobic.004G248400 APO, putative, expressed -
4 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
5 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
6 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
7 Sobic.005G138600 - -
8 Sobic.009G014100 OsFBX178 - F-box domain containing protein, expressed -
9 Sobic.004G333400 COBW domain containing protein, putative, expressed -
10 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
11 Sobic.004G144000 - -
12 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
13 Sobic.003G356100 CRR2, putative, expressed -
14 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
15 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
16 Sobic.002G331800 PPR repeat containing protein, expressed -
17 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
18 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
19 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
20 Sobic.002G073200 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase


Gene co-expression network
sample Sobic009G052700 Sobic009G052700 Sobic003G334100 Sobic003G334100 Sobic009G052700--Sobic003G334100 Sobic006G214700 Sobic006G214700 Sobic009G052700--Sobic006G214700 Sobic004G248400 Sobic004G248400 Sobic009G052700--Sobic004G248400 Sobic010G211500 Sobic010G211500 Sobic009G052700--Sobic010G211500 Sobic005G028900 Sobic005G028900 Sobic009G052700--Sobic005G028900 Sobic003G179400 Sobic003G179400 Sobic009G052700--Sobic003G179400 Sobic005G138600 Sobic005G138600 Sobic009G052700--Sobic005G138600 Sobic009G014100 Sobic009G014100 Sobic009G052700--Sobic009G014100 Sobic004G333400 Sobic004G333400 Sobic009G052700--Sobic004G333400 Sobic003G334100--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic003G334100--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic003G334100--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic003G334100--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic003G334100--Sobic002G331800 Sobic002G181000 Sobic002G181000 Sobic003G334100--Sobic002G181000 Sobic003G334100--Sobic009G052700 Sobic004G144000 Sobic004G144000 Sobic003G334100--Sobic004G144000 Sobic009G234200 Sobic009G234200 Sobic003G334100--Sobic009G234200 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic008G063200 Sobic008G063200 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic004G248400--Sobic006G214700 Sobic004G248400--Sobic004G333400 Sobic004G248400--Sobic009G052700 Sobic002G168300 Sobic002G168300 Sobic004G248400--Sobic002G168300 Sobic004G248400--Sobic001G450600 Sobic004G248400--Sobic003G334100 Sobic004G248400--Sobic003G179400 Sobic004G248400--Sobic008G063200 Sobic010G110332 Sobic010G110332 Sobic004G248400--Sobic010G110332 Sobic007G227600 Sobic007G227600 Sobic010G211500--Sobic007G227600 Sobic009G036300 Sobic009G036300 Sobic010G211500--Sobic009G036300 Sobic001G207200 Sobic001G207200 Sobic010G211500--Sobic001G207200 Sobic010G211500--Sobic009G052700 Sobic010G211500--Sobic003G084500 Sobic010G211500--Sobic001G450600 Sobic010G211500--Sobic003G334100 Sobic010G211500--Sobic010G183400 Sobic010G074100 Sobic010G074100 Sobic010G211500--Sobic010G074100 Sobic005G028900--Sobic006G214700 Sobic005G028900--Sobic004G144000 Sobic005G028900--Sobic010G183400 Sobic004G250200 Sobic004G250200 Sobic005G028900--Sobic004G250200 Sobic003G439600 Sobic003G439600 Sobic005G028900--Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic005G028900--Sobic003G245800 Sobic005G028900--Sobic003G179400 Sobic005G028900--Sobic007G227600 Sobic005G028900--Sobic004G333400 Sobic003G179400--Sobic006G214700 Sobic010G231100 Sobic010G231100 Sobic003G179400--Sobic010G231100 Sobic003G179400--Sobic005G028900 Sobic003G179400--Sobic010G076800 Sobic003G179400--Sobic004G333400 Sobic003G179400--Sobic001G450600 Sobic003G179400--Sobic008G063200 Sobic003G179400--Sobic002G331800 Sobic003G179400--Sobic006G110900 Sobic010G197000 Sobic010G197000 Sobic005G138600--Sobic010G197000 Sobic005G138600--Sobic002G331800 Sobic002G354600 Sobic002G354600 Sobic005G138600--Sobic002G354600 Sobic005G138600--Sobic003G439600 Sobic005G138600--Sobic010G211500 Sobic005G138600--Sobic009G052700 Sobic005G138600--Sobic006G214700 Sobic005G138600--Sobic003G245800 Sobic001G071200 Sobic001G071200 Sobic005G138600--Sobic001G071200 Sobic009G014100--Sobic010G197000 Sobic008G172300 Sobic008G172300 Sobic009G014100--Sobic008G172300 Sobic002G073200 Sobic002G073200 Sobic009G014100--Sobic002G073200 Sobic003G108900 Sobic003G108900 Sobic009G014100--Sobic003G108900 Sobic004G026500 Sobic004G026500 Sobic009G014100--Sobic004G026500 Sobic009G014100--Sobic002G354600 Sobic009G014100--Sobic004G333400 Sobic003G190000 Sobic003G190000 Sobic009G014100--Sobic003G190000 Sobic009G014100--Sobic002G168300 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700
Octagon: transcription factors


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