Gene annotation
Transcriptome id Sobic.005G028900.2
Synonym Sb05g002430, CcdA
Functional annotation cytochrome c-type biogenesis protein dbsD-like, putative, expressed
UniProt A0A1B6PPV7
Pfam PF02683
Panther DB PTHR31272 PTHR31272:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0017004; cytochrome complex assembly GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G54290 : cytochrome c biogenesis protein family
RAP-DB (Rice) LOC_Os11g04500.1 : cytochrome c-type biogenesis protein dbsD-like, putative, expressed
MaizeGDB (Corn) Zm00025a013088
Brachypodium PNT65495 , KQJ92380
Barley HORVU5Hr1G043600.10 , HORVU5Hr1G043600.1 , HORVU5Hr1G043600.2 , HORVU5Hr1G043600.3 , HORVU5Hr1G043600.4 , HORVU5Hr1G043600.5 , HORVU5Hr1G043600.6 , HORVU5Hr1G043600.7 , HORVU5Hr1G043600.8 , HORVU5Hr1G043600.9
Wheat TraesCS5A02G135700 , TraesCS5A02G135700
Populus PNT59387 , PNT59386 , PNT59385 , PNT59384


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cDNA sequences
Sobic.005G028900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G214700 APO, putative, expressed -
2 Sobic.004G144000 - -
3 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
4 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
5 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
6 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
7 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
8 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
9 Sobic.004G333400 COBW domain containing protein, putative, expressed -
10 Sobic.003G356100 CRR2, putative, expressed -
11 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
12 Sobic.003G334100 zinc finger family protein, putative, expressed -
13 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
14 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
15 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
16 Sobic.002G331800 PPR repeat containing protein, expressed -
17 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
18 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
20 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -


Gene co-expression network
sample Sobic005G028900 Sobic005G028900 Sobic006G214700 Sobic006G214700 Sobic005G028900--Sobic006G214700 Sobic004G144000 Sobic004G144000 Sobic005G028900--Sobic004G144000 Sobic010G183400 Sobic010G183400 Sobic005G028900--Sobic010G183400 Sobic004G250200 Sobic004G250200 Sobic005G028900--Sobic004G250200 Sobic003G439600 Sobic003G439600 Sobic005G028900--Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic005G028900--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic005G028900--Sobic003G179400 Sobic007G227600 Sobic007G227600 Sobic005G028900--Sobic007G227600 Sobic004G333400 Sobic004G333400 Sobic005G028900--Sobic004G333400 Sobic006G214700--Sobic003G179400 Sobic001G450600 Sobic001G450600 Sobic006G214700--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic006G214700--Sobic002G331800 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic008G063200 Sobic008G063200 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic004G144000--Sobic005G028900 Sobic003G334100 Sobic003G334100 Sobic004G144000--Sobic003G334100 Sobic004G144000--Sobic004G250200 Sobic004G144000--Sobic004G333400 Sobic004G144000--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic004G144000--Sobic003G084500 Sobic003G444500 Sobic003G444500 Sobic004G144000--Sobic003G444500 Sobic002G181000 Sobic002G181000 Sobic004G144000--Sobic002G181000 Sobic004G265900 Sobic004G265900 Sobic004G144000--Sobic004G265900 Sobic009G234200 Sobic009G234200 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic003G330100 Sobic003G330100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic004G250200--Sobic003G330100 Sobic004G250200--Sobic010G183400 Sobic004G250200--Sobic003G245800 Sobic004G250200--Sobic009G234200 Sobic006G111600 Sobic006G111600 Sobic004G250200--Sobic006G111600 Sobic002G345200 Sobic002G345200 Sobic004G250200--Sobic002G345200 Sobic004G250200--Sobic005G028900 Sobic003G221700 Sobic003G221700 Sobic004G250200--Sobic003G221700 Sobic004G250200--Sobic003G444500 Sobic003G439600--Sobic003G245800 Sobic003G439600--Sobic010G183400 Sobic003G439600--Sobic002G331800 Sobic003G439600--Sobic006G214700 Sobic003G439600--Sobic005G028900 Sobic002G163700 Sobic002G163700 Sobic003G439600--Sobic002G163700 Sobic006G197700 Sobic006G197700 Sobic003G439600--Sobic006G197700 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100 Sobic003G179400--Sobic006G214700 Sobic010G231100 Sobic010G231100 Sobic003G179400--Sobic010G231100 Sobic003G179400--Sobic005G028900 Sobic003G179400--Sobic010G076800 Sobic003G179400--Sobic004G333400 Sobic003G179400--Sobic001G450600 Sobic003G179400--Sobic008G063200 Sobic003G179400--Sobic002G331800 Sobic003G179400--Sobic006G110900 Sobic010G074100 Sobic010G074100 Sobic007G227600--Sobic010G074100 Sobic009G036300 Sobic009G036300 Sobic007G227600--Sobic009G036300 Sobic001G388400 Sobic001G388400 Sobic007G227600--Sobic001G388400 Sobic007G227600--Sobic009G234200 Sobic010G028000 Sobic010G028000 Sobic007G227600--Sobic010G028000 Sobic010G074200 Sobic010G074200 Sobic007G227600--Sobic010G074200 Sobic009G253000 Sobic009G253000 Sobic007G227600--Sobic009G253000 Sobic010G211500 Sobic010G211500 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700
Octagon: transcription factors


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