Gene annotation
Transcriptome id Sobic.004G144000.1
Synonym
Functional annotation -
UniProt A0A194YQU2
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
2 Sobic.003G334100 zinc finger family protein, putative, expressed -
3 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
4 Sobic.004G333400 COBW domain containing protein, putative, expressed -
5 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
6 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
7 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
8 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
9 Sobic.004G265900 class I glutamine amidotransferase, putative, expressed K01956: carA, carbamoyl-phosphate synthase small subunit
10 Sobic.003G356100 CRR2, putative, expressed -
11 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
12 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
13 Sobic.006G214700 APO, putative, expressed -
14 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
15 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
16 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
17 Sobic.008G089500 Fe-S metabolism associated domain containing protein, expressed K03517: quinolinate synthase
18 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
19 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
20 Sobic.002G331800 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic004G144000 Sobic004G144000 Sobic005G028900 Sobic005G028900 Sobic004G144000--Sobic005G028900 Sobic003G334100 Sobic003G334100 Sobic004G144000--Sobic003G334100 Sobic004G250200 Sobic004G250200 Sobic004G144000--Sobic004G250200 Sobic004G333400 Sobic004G333400 Sobic004G144000--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic004G144000--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic004G144000--Sobic003G084500 Sobic003G444500 Sobic003G444500 Sobic004G144000--Sobic003G444500 Sobic002G181000 Sobic002G181000 Sobic004G144000--Sobic002G181000 Sobic004G265900 Sobic004G265900 Sobic004G144000--Sobic004G265900 Sobic006G214700 Sobic006G214700 Sobic005G028900--Sobic006G214700 Sobic005G028900--Sobic004G144000 Sobic005G028900--Sobic010G183400 Sobic005G028900--Sobic004G250200 Sobic003G439600 Sobic003G439600 Sobic005G028900--Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic005G028900--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic005G028900--Sobic003G179400 Sobic007G227600 Sobic007G227600 Sobic005G028900--Sobic007G227600 Sobic005G028900--Sobic004G333400 Sobic003G334100--Sobic004G333400 Sobic003G334100--Sobic010G183400 Sobic003G334100--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic003G334100--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic003G334100--Sobic002G331800 Sobic003G334100--Sobic002G181000 Sobic009G052700 Sobic009G052700 Sobic003G334100--Sobic009G052700 Sobic003G334100--Sobic004G144000 Sobic009G234200 Sobic009G234200 Sobic003G334100--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic004G250200--Sobic003G330100 Sobic004G250200--Sobic010G183400 Sobic004G250200--Sobic003G245800 Sobic004G250200--Sobic009G234200 Sobic006G111600 Sobic006G111600 Sobic004G250200--Sobic006G111600 Sobic002G345200 Sobic002G345200 Sobic004G250200--Sobic002G345200 Sobic004G250200--Sobic005G028900 Sobic003G221700 Sobic003G221700 Sobic004G250200--Sobic003G221700 Sobic004G250200--Sobic003G444500 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic003G084500--Sobic004G333400 Sobic003G084500--Sobic003G334100 Sobic003G084500--Sobic001G450600 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G084500--Sobic003G444500 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G444500--Sobic003G330100 Sobic004G179200 Sobic004G179200 Sobic003G444500--Sobic004G179200 Sobic002G251400 Sobic002G251400 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G444500--Sobic003G221700 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic003G444500--Sobic004G250200 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic009G094700 Sobic009G094700 Sobic004G265900--Sobic009G094700 Sobic004G265900--Sobic004G144000 Sobic003G310100 Sobic003G310100 Sobic004G265900--Sobic003G310100 Sobic008G089500 Sobic008G089500 Sobic004G265900--Sobic008G089500 Sobic004G265900--Sobic003G444500 Sobic004G265900--Sobic003G330100 Sobic004G265900--Sobic005G028900 Sobic004G265900--Sobic010G183400 Sobic008G193300 Sobic008G193300 Sobic004G265900--Sobic008G193300
Octagon: transcription factors


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