Gene annotation
Transcriptome id Sobic.004G250200.1,Sobic.004G250200.2
Synonym Sb04g028980
Functional annotation ORMM1 (PubMedID : 24676859)
RNA recognition motif family protein, expressed
UniProt A0A194YRK3 , A0A194YRG5
Pfam PF00076
Panther DB PTHR24012 PTHR31346 PTHR31346:SF2
NCBI CDD KOG0130; RNA-binding protein RBM8/Tsunagi (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G20930 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g49820.1 : RNA recognition motif family protein, expressed
MaizeGDB (Corn) Zm00025a021914
Brachypodium KQK01609
Barley HORVU6Hr1G073010.24 , HORVU6Hr1G073010.25 , HORVU6Hr1G073010.26 , HORVU6Hr1G073010.27 , HORVU6Hr1G073010.20 , HORVU6Hr1G073010.21 , HORVU6Hr1G073010.22 , HORVU6Hr1G073010.23 , HORVU6Hr1G073010.28 , HORVU6Hr1G073010.19 , HORVU6Hr1G073010.18 , HORVU6Hr1G073010.11 , HORVU6Hr1G073010.13 , HORVU6Hr1G073010.12 , HORVU6Hr1G073010.15 , HORVU6Hr1G073010.14 , HORVU6Hr1G073010.17 , HORVU6Hr1G073010.16 , HORVU6Hr1G073010.35 , HORVU6Hr1G073010.29 , HORVU6Hr1G073010.1 , HORVU6Hr1G073010.34 , HORVU6Hr1G073010.33 , HORVU6Hr1G073010.32 , HORVU6Hr1G073010.31 , HORVU6Hr1G073010.30
Wheat TraesCS6B02G322400 , TraesCS6D02G273200 , TraesCS6A02G292000 , TraesCS6D02G273200 , TraesCS6A02G292000
Populus -


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cDNA sequences
Sobic.004G250200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
2 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
3 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
4 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
5 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
6 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
8 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
9 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
10 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
11 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
12 Sobic.004G144000 - -
13 Sobic.003G334100 zinc finger family protein, putative, expressed -
14 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
16 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
17 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
19 Sobic.010G074200 - -
20 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase


Gene co-expression network
sample Sobic004G250200 Sobic004G250200 Sobic003G330100 Sobic003G330100 Sobic004G250200--Sobic003G330100 Sobic010G183400 Sobic010G183400 Sobic004G250200--Sobic010G183400 Sobic003G245800 Sobic003G245800 Sobic004G250200--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic004G250200--Sobic009G234200 Sobic006G111600 Sobic006G111600 Sobic004G250200--Sobic006G111600 Sobic002G345200 Sobic002G345200 Sobic004G250200--Sobic002G345200 Sobic005G028900 Sobic005G028900 Sobic004G250200--Sobic005G028900 Sobic003G221700 Sobic003G221700 Sobic004G250200--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic004G250200--Sobic003G444500 Sobic003G330100--Sobic006G111600 Sobic002G131700 Sobic002G131700 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic003G330100--Sobic002G345200 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic004G333400 Sobic004G333400 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic003G334100 Sobic003G334100 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic001G450600 Sobic001G450600 Sobic010G183400--Sobic001G450600 Sobic003G439600 Sobic003G439600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic006G197700 Sobic006G197700 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic006G111600--Sobic003G330100 Sobic006G111600--Sobic003G221700 Sobic006G111600--Sobic002G131700 Sobic006G111600--Sobic004G179200 Sobic006G111600--Sobic009G234200 Sobic006G111600--Sobic004G250200 Sobic006G111600--Sobic010G183400 Sobic006G111600--Sobic006G197700 Sobic009G028400 Sobic009G028400 Sobic006G111600--Sobic009G028400 Sobic002G345200--Sobic003G245800 Sobic002G345200--Sobic006G197700 Sobic002G345200--Sobic003G330100 Sobic002G345200--Sobic004G250200 Sobic002G345200--Sobic003G221700 Sobic002G345200--Sobic008G072300 Sobic002G345200--Sobic006G111600 Sobic002G345200--Sobic002G250100 Sobic002G345200--Sobic010G028000 Sobic006G214700 Sobic006G214700 Sobic005G028900--Sobic006G214700 Sobic004G144000 Sobic004G144000 Sobic005G028900--Sobic004G144000 Sobic005G028900--Sobic010G183400 Sobic005G028900--Sobic004G250200 Sobic005G028900--Sobic003G439600 Sobic005G028900--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic005G028900--Sobic003G179400 Sobic007G227600 Sobic007G227600 Sobic005G028900--Sobic007G227600 Sobic005G028900--Sobic004G333400 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic003G221700--Sobic002G131700 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G444500--Sobic003G330100 Sobic003G444500--Sobic004G179200 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G444500--Sobic003G221700 Sobic003G084500 Sobic003G084500 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic003G444500--Sobic004G250200
Octagon: transcription factors


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