Gene annotation
Transcriptome id Sobic.007G227600.2
Synonym Sb07g029220
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA recognition motif containing protein, putative, expressed
UniProt C5YJS0
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G09040 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g37700.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004927
Brachypodium KQJ98703
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.007G227600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
2 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
3 Sobic.001G388400 expressed protein -
4 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
5 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
6 Sobic.010G074200 - -
7 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
8 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
9 Sobic.002G163700 expressed protein -
10 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
11 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
12 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
13 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
14 Sobic.002G250100 dehydrogenase, putative, expressed -
15 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
16 Sobic.003G356100 CRR2, putative, expressed -
17 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
18 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
19 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.006G214700 APO, putative, expressed -


Gene co-expression network
sample Sobic007G227600 Sobic007G227600 Sobic010G074100 Sobic010G074100 Sobic007G227600--Sobic010G074100 Sobic009G036300 Sobic009G036300 Sobic007G227600--Sobic009G036300 Sobic001G388400 Sobic001G388400 Sobic007G227600--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic007G227600--Sobic009G234200 Sobic010G028000 Sobic010G028000 Sobic007G227600--Sobic010G028000 Sobic010G074200 Sobic010G074200 Sobic007G227600--Sobic010G074200 Sobic009G253000 Sobic009G253000 Sobic007G227600--Sobic009G253000 Sobic010G211500 Sobic010G211500 Sobic007G227600--Sobic010G211500 Sobic002G163700 Sobic002G163700 Sobic007G227600--Sobic002G163700 Sobic010G074100--Sobic007G227600 Sobic010G074100--Sobic010G074200 Sobic010G074100--Sobic009G036300 Sobic010G074100--Sobic001G388400 Sobic010G074100--Sobic010G028000 Sobic009G233800 Sobic009G233800 Sobic010G074100--Sobic009G233800 Sobic010G074100--Sobic010G211500 Sobic010G074100--Sobic009G253000 Sobic009G062800 Sobic009G062800 Sobic010G074100--Sobic009G062800 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic009G036300--Sobic010G074100 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic006G204100 Sobic006G204100 Sobic009G036300--Sobic006G204100 Sobic009G036300--Sobic002G163700 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic001G388400--Sobic009G036300 Sobic001G388400--Sobic010G074200 Sobic001G388400--Sobic007G227600 Sobic001G388400--Sobic006G204100 Sobic001G388400--Sobic009G253000 Sobic001G388400--Sobic009G233800 Sobic002G250100 Sobic002G250100 Sobic001G388400--Sobic002G250100 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic010G183400 Sobic010G183400 Sobic009G234200--Sobic010G183400 Sobic003G330100 Sobic003G330100 Sobic009G234200--Sobic003G330100 Sobic004G250200 Sobic004G250200 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic003G245800 Sobic003G245800 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G028000--Sobic010G074200 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic010G028000--Sobic003G330100 Sobic010G028000--Sobic003G245800 Sobic010G028000--Sobic010G183400 Sobic010G074200--Sobic006G204100 Sobic010G074200--Sobic010G074100 Sobic010G074200--Sobic001G388400 Sobic010G074200--Sobic009G233800 Sobic010G074200--Sobic009G036300 Sobic010G074200--Sobic010G028000 Sobic010G074200--Sobic007G227600 Sobic010G074200--Sobic009G234200 Sobic010G074200--Sobic003G330100 Sobic009G253000--Sobic001G388400 Sobic009G253000--Sobic007G227600 Sobic009G238100 Sobic009G238100 Sobic009G253000--Sobic009G238100 Sobic009G253000--Sobic010G074100 Sobic009G253000--Sobic009G036300 Sobic009G253000--Sobic010G028000 Sobic009G253000--Sobic009G233800 Sobic009G253000--Sobic010G074200 Sobic009G253000--Sobic006G204100 Sobic010G211500--Sobic007G227600 Sobic010G211500--Sobic009G036300 Sobic001G207200 Sobic001G207200 Sobic010G211500--Sobic001G207200 Sobic009G052700 Sobic009G052700 Sobic010G211500--Sobic009G052700 Sobic003G084500 Sobic003G084500 Sobic010G211500--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic010G211500--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic010G211500--Sobic003G334100 Sobic010G211500--Sobic010G183400 Sobic010G211500--Sobic010G074100 Sobic003G439600 Sobic003G439600 Sobic002G163700--Sobic003G439600 Sobic002G163700--Sobic001G450600 Sobic002G163700--Sobic007G227600 Sobic006G214700 Sobic006G214700 Sobic002G163700--Sobic006G214700 Sobic002G163700--Sobic002G250100 Sobic006G197700 Sobic006G197700 Sobic002G163700--Sobic006G197700 Sobic002G386400 Sobic002G386400 Sobic002G163700--Sobic002G386400 Sobic002G038300 Sobic002G038300 Sobic002G163700--Sobic002G038300 Sobic002G163700--Sobic003G245800
Octagon: transcription factors


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