Gene annotation
Transcriptome id Sobic.002G386400.1
Synonym CP29, Sb02g040260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA recognition motif containing protein, putative, expressed
UniProt C5X377
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology K11294; NCL, nucleolin
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G53460 : chloroplast RNA-binding protein 29
RAP-DB (Rice) LOC_Os07g43810.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002658 , Zm00025a048863 , Zm00025a015295
Brachypodium -
Barley HORVU3Hr1G083830.1 , HORVU2Hr1G127640.1 , HORVU1Hr1G009390.1
Wheat TraesCS2D02G161900 , TraesCS2D02G161900 , TraesCS2B02G181600 , TraesCS2A02G156100 , TraesCS2A02G156100
Populus -


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cDNA sequences
Sobic.002G386400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
2 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
3 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
4 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
5 Sobic.002G163700 expressed protein -
6 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
7 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
8 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
9 Sobic.001G388400 expressed protein -
10 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
11 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
12 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
13 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
14 Sobic.006G214700 APO, putative, expressed -
15 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
16 Sobic.007G132500 F-box domain containing protein, expressed -
17 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
18 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
19 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G386400 Sobic002G386400 Sobic002G038300 Sobic002G038300 Sobic002G386400--Sobic002G038300 Sobic003G208300 Sobic003G208300 Sobic002G386400--Sobic003G208300 Sobic006G197700 Sobic006G197700 Sobic002G386400--Sobic006G197700 Sobic001G161300 Sobic001G161300 Sobic002G386400--Sobic001G161300 Sobic002G163700 Sobic002G163700 Sobic002G386400--Sobic002G163700 Sobic003G330100 Sobic003G330100 Sobic002G386400--Sobic003G330100 Sobic010G028000 Sobic010G028000 Sobic002G386400--Sobic010G028000 Sobic009G234200 Sobic009G234200 Sobic002G386400--Sobic009G234200 Sobic001G388400 Sobic001G388400 Sobic002G386400--Sobic001G388400 Sobic002G038300--Sobic002G386400 Sobic002G038300--Sobic001G161300 Sobic002G038300--Sobic002G163700 Sobic002G038300--Sobic001G388400 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic002G038300--Sobic003G208300 Sobic001G450600 Sobic001G450600 Sobic002G038300--Sobic001G450600 Sobic002G038300--Sobic010G028000 Sobic003G208300--Sobic002G386400 Sobic007G132500 Sobic007G132500 Sobic003G208300--Sobic007G132500 Sobic003G208300--Sobic002G038300 Sobic003G208300--Sobic002G163700 Sobic009G004800 Sobic009G004800 Sobic003G208300--Sobic009G004800 Sobic003G208300--Sobic006G197700 Sobic003G208300--Sobic001G161300 Sobic006G214700 Sobic006G214700 Sobic003G208300--Sobic006G214700 Sobic003G208300--Sobic003G330100 Sobic003G245800 Sobic003G245800 Sobic006G197700--Sobic003G245800 Sobic002G345200 Sobic002G345200 Sobic006G197700--Sobic002G345200 Sobic006G111600 Sobic006G111600 Sobic006G197700--Sobic006G111600 Sobic006G197700--Sobic007G132500 Sobic003G439600 Sobic003G439600 Sobic006G197700--Sobic003G439600 Sobic006G197700--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic006G197700--Sobic003G221700 Sobic006G197700--Sobic002G386400 Sobic006G197700--Sobic002G163700 Sobic001G161300--Sobic002G038300 Sobic004G007500 Sobic004G007500 Sobic001G161300--Sobic004G007500 Sobic001G161300--Sobic002G386400 Sobic004G068700 Sobic004G068700 Sobic001G161300--Sobic004G068700 Sobic001G276100 Sobic001G276100 Sobic001G161300--Sobic001G276100 Sobic002G226100 Sobic002G226100 Sobic001G161300--Sobic002G226100 Sobic002G384400 Sobic002G384400 Sobic001G161300--Sobic002G384400 Sobic004G343100 Sobic004G343100 Sobic001G161300--Sobic004G343100 Sobic009G000900 Sobic009G000900 Sobic001G161300--Sobic009G000900 Sobic002G163700--Sobic003G439600 Sobic002G163700--Sobic001G450600 Sobic007G227600 Sobic007G227600 Sobic002G163700--Sobic007G227600 Sobic002G163700--Sobic006G214700 Sobic002G250100 Sobic002G250100 Sobic002G163700--Sobic002G250100 Sobic002G163700--Sobic006G197700 Sobic002G163700--Sobic002G386400 Sobic002G163700--Sobic002G038300 Sobic002G163700--Sobic003G245800 Sobic003G330100--Sobic006G111600 Sobic002G131700 Sobic002G131700 Sobic003G330100--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic010G183400 Sobic010G183400 Sobic003G330100--Sobic010G183400 Sobic003G330100--Sobic002G345200 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G074200 Sobic010G074200 Sobic010G028000--Sobic010G074200 Sobic009G036300 Sobic009G036300 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic010G028000--Sobic003G330100 Sobic010G028000--Sobic003G245800 Sobic010G028000--Sobic010G183400 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic001G388400--Sobic009G036300 Sobic001G388400--Sobic010G074200 Sobic001G388400--Sobic007G227600 Sobic001G388400--Sobic006G204100 Sobic009G253000 Sobic009G253000 Sobic001G388400--Sobic009G253000 Sobic009G233800 Sobic009G233800 Sobic001G388400--Sobic009G233800 Sobic001G388400--Sobic002G250100
Octagon: transcription factors


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