Gene annotation
Transcriptome id Sobic.006G197700.2,Sobic.006G197700.3,Sobic.006G197700.1
Synonym Sb06g026990
Functional annotation Unnamed (PubMedID : 24676859)
RNA recognition motif containing protein, putative, expressed
UniProt C5YF03
Pfam PF14259 PF00076
Panther DB PTHR24012
NCBI CDD KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) KOG0114Predicted RNA-binding protein (RRM superfamily) KOG0131Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G35410 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g50110.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009997
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
2 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
4 Sobic.007G132500 F-box domain containing protein, expressed -
5 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
6 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
7 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
8 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
9 Sobic.002G163700 expressed protein -
10 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
11 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
12 Sobic.009G028400 expressed protein -
13 Sobic.005G021600 expressed protein -
14 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
15 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
16 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
17 Sobic.002G250100 dehydrogenase, putative, expressed -
18 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
19 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
20 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic006G197700 Sobic006G197700 Sobic003G245800 Sobic003G245800 Sobic006G197700--Sobic003G245800 Sobic002G345200 Sobic002G345200 Sobic006G197700--Sobic002G345200 Sobic006G111600 Sobic006G111600 Sobic006G197700--Sobic006G111600 Sobic007G132500 Sobic007G132500 Sobic006G197700--Sobic007G132500 Sobic003G439600 Sobic003G439600 Sobic006G197700--Sobic003G439600 Sobic003G330100 Sobic003G330100 Sobic006G197700--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic006G197700--Sobic003G221700 Sobic002G386400 Sobic002G386400 Sobic006G197700--Sobic002G386400 Sobic002G163700 Sobic002G163700 Sobic006G197700--Sobic002G163700 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic004G250200 Sobic004G250200 Sobic003G245800--Sobic004G250200 Sobic010G183400 Sobic010G183400 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic009G234200 Sobic009G234200 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100 Sobic002G345200--Sobic003G245800 Sobic002G345200--Sobic006G197700 Sobic002G345200--Sobic003G330100 Sobic002G345200--Sobic004G250200 Sobic002G345200--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic002G345200--Sobic008G072300 Sobic002G345200--Sobic006G111600 Sobic002G345200--Sobic002G250100 Sobic010G028000 Sobic010G028000 Sobic002G345200--Sobic010G028000 Sobic006G111600--Sobic003G330100 Sobic006G111600--Sobic003G221700 Sobic002G131700 Sobic002G131700 Sobic006G111600--Sobic002G131700 Sobic004G179200 Sobic004G179200 Sobic006G111600--Sobic004G179200 Sobic006G111600--Sobic009G234200 Sobic006G111600--Sobic004G250200 Sobic006G111600--Sobic010G183400 Sobic006G111600--Sobic006G197700 Sobic009G028400 Sobic009G028400 Sobic006G111600--Sobic009G028400 Sobic007G132500--Sobic006G197700 Sobic005G021600 Sobic005G021600 Sobic007G132500--Sobic005G021600 Sobic007G132500--Sobic006G111600 Sobic003G208300 Sobic003G208300 Sobic007G132500--Sobic003G208300 Sobic008G063100 Sobic008G063100 Sobic007G132500--Sobic008G063100 Sobic001G006000 Sobic001G006000 Sobic007G132500--Sobic001G006000 Sobic007G132500--Sobic009G028400 Sobic006G110900 Sobic006G110900 Sobic007G132500--Sobic006G110900 Sobic008G063200 Sobic008G063200 Sobic007G132500--Sobic008G063200 Sobic003G439600--Sobic003G245800 Sobic003G439600--Sobic010G183400 Sobic002G331800 Sobic002G331800 Sobic003G439600--Sobic002G331800 Sobic006G214700 Sobic006G214700 Sobic003G439600--Sobic006G214700 Sobic005G028900 Sobic005G028900 Sobic003G439600--Sobic005G028900 Sobic003G439600--Sobic002G163700 Sobic003G439600--Sobic006G197700 Sobic001G450600 Sobic001G450600 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic003G330100--Sobic006G111600 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic003G330100--Sobic002G345200 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic003G221700--Sobic002G131700 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic002G038300 Sobic002G038300 Sobic002G386400--Sobic002G038300 Sobic002G386400--Sobic003G208300 Sobic002G386400--Sobic006G197700 Sobic001G161300 Sobic001G161300 Sobic002G386400--Sobic001G161300 Sobic002G386400--Sobic002G163700 Sobic002G386400--Sobic003G330100 Sobic002G386400--Sobic010G028000 Sobic002G386400--Sobic009G234200 Sobic001G388400 Sobic001G388400 Sobic002G386400--Sobic001G388400 Sobic002G163700--Sobic003G439600 Sobic002G163700--Sobic001G450600 Sobic007G227600 Sobic007G227600 Sobic002G163700--Sobic007G227600 Sobic002G163700--Sobic006G214700 Sobic002G163700--Sobic002G250100 Sobic002G163700--Sobic006G197700 Sobic002G163700--Sobic002G386400 Sobic002G163700--Sobic002G038300 Sobic002G163700--Sobic003G245800
Octagon: transcription factors


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