Gene annotation
Transcriptome id Sobic.003G221700.2,Sobic.003G221700.3,Sobic.003G221700.1
Synonym Sb03g028010
Functional annotation psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed
UniProt A0A1B6Q4Q4 , A0A1B6Q4Q6 , A0A1B6Q4T7
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G11450 : Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os01g43070.1 : psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a028405 , Zm00025a038543
Brachypodium KQK08748
Barley -
Wheat TraesCS7D02G492200 , TraesCS7D02G492200 , TraesCS7D02G492200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G333000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
3 Sobic.004G179200 expressed protein -
4 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
5 Sobic.002G251400 expressed protein -
6 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
7 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
8 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
9 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
11 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
12 Sobic.002G198000 CRR6, putative, expressed -
13 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.009G028400 expressed protein -
15 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
16 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
17 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
18 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
19 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13


Gene co-expression network
sample Sobic003G221700 Sobic003G221700 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic006G111600 Sobic006G111600 Sobic003G221700--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic003G221700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic003G221700--Sobic002G131700 Sobic003G245800 Sobic003G245800 Sobic003G221700--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic003G221700--Sobic009G234200 Sobic008G072300 Sobic008G072300 Sobic003G221700--Sobic008G072300 Sobic001G333000--Sobic003G221700 Sobic002G305700 Sobic002G305700 Sobic001G333000--Sobic002G305700 Sobic001G531200 Sobic001G531200 Sobic001G333000--Sobic001G531200 Sobic010G095200 Sobic010G095200 Sobic001G333000--Sobic010G095200 Sobic006G248200 Sobic006G248200 Sobic001G333000--Sobic006G248200 Sobic001G240000 Sobic001G240000 Sobic001G333000--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic001G333000--Sobic003G386300 Sobic001G333000--Sobic002G251400 Sobic002G297400 Sobic002G297400 Sobic001G333000--Sobic002G297400 Sobic006G111600--Sobic003G330100 Sobic006G111600--Sobic003G221700 Sobic006G111600--Sobic002G131700 Sobic006G111600--Sobic004G179200 Sobic006G111600--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic006G111600--Sobic004G250200 Sobic010G183400 Sobic010G183400 Sobic006G111600--Sobic010G183400 Sobic006G197700 Sobic006G197700 Sobic006G111600--Sobic006G197700 Sobic009G028400 Sobic009G028400 Sobic006G111600--Sobic009G028400 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic004G179200--Sobic002G297400 Sobic001G469933 Sobic001G469933 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100 Sobic003G330100--Sobic006G111600 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200 Sobic001G040000 Sobic001G040000 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic002G251400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic007G013400 Sobic007G013400 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic002G131700--Sobic004G179200 Sobic002G131700--Sobic003G330100 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic002G131700--Sobic003G221700 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G439600 Sobic003G439600 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic009G234200--Sobic006G111600 Sobic009G234200--Sobic004G179200 Sobic008G072300--Sobic006G204100 Sobic008G072300--Sobic003G330100 Sobic008G072300--Sobic003G221700 Sobic008G072300--Sobic009G234200 Sobic008G072300--Sobic006G111600 Sobic008G072300--Sobic002G345200 Sobic007G034500 Sobic007G034500 Sobic008G072300--Sobic007G034500 Sobic010G074200 Sobic010G074200 Sobic008G072300--Sobic010G074200 Sobic008G072300--Sobic004G250200
Octagon: transcription factors


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