Gene annotation
Transcriptome id Sobic.002G131700.1
Synonym Sb02g011330, ATRBP33, ATRBP31, RBP31, CP31
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1W0W3M4
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G24770 : 31-kDa RNA binding protein
RAP-DB (Rice) LOC_Os09g39180.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045914
Brachypodium KQJ91553
Barley HORVU5Hr1G091810.4 , HORVU5Hr1G091810.5 , HORVU5Hr1G091810.2 , HORVU5Hr1G091810.1
Wheat TraesCS5A02G368400 , TraesCS5D02G378000 , TraesCS5B02G370700
Populus -


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cDNA sequences
Sobic.002G131700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G179200 expressed protein -
2 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
3 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
4 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
5 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
6 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
7 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
8 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
9 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
10 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
11 Sobic.001G196200 CRS1/YhbY domain containing protein, expressed -
12 Sobic.003G324700 expressed protein -
13 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
14 Sobic.003G439000 rubredoxin family protein, putative, expressed -
15 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
16 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
17 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
19 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family


Gene co-expression network
sample Sobic002G131700 Sobic002G131700 Sobic004G179200 Sobic004G179200 Sobic002G131700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic002G131700--Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic005G002900 Sobic005G002900 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic001G469933 Sobic001G469933 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic002G297400 Sobic002G297400 Sobic004G179200--Sobic002G297400 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic009G234200 Sobic009G234200 Sobic004G179200--Sobic009G234200 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100 Sobic003G330100--Sobic006G111600 Sobic003G330100--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic010G183400 Sobic010G183400 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200 Sobic006G111600--Sobic003G330100 Sobic006G111600--Sobic003G221700 Sobic006G111600--Sobic002G131700 Sobic006G111600--Sobic004G179200 Sobic006G111600--Sobic009G234200 Sobic006G111600--Sobic004G250200 Sobic006G111600--Sobic010G183400 Sobic006G197700 Sobic006G197700 Sobic006G111600--Sobic006G197700 Sobic009G028400 Sobic009G028400 Sobic006G111600--Sobic009G028400 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic007G171800--Sobic005G110481 Sobic002G251400 Sobic002G251400 Sobic007G171800--Sobic002G251400 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic007G171800--Sobic010G035200 Sobic005G002900--Sobic001G083100 Sobic006G055800 Sobic006G055800 Sobic005G002900--Sobic006G055800 Sobic009G148500 Sobic009G148500 Sobic005G002900--Sobic009G148500 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic005G002900--Sobic006G106400 Sobic003G432500 Sobic003G432500 Sobic005G002900--Sobic003G432500 Sobic003G232700 Sobic003G232700 Sobic005G002900--Sobic003G232700 Sobic005G002900--Sobic002G131700 Sobic010G035200--Sobic001G469933 Sobic010G035200--Sobic003G324700 Sobic010G035200--Sobic007G171800 Sobic010G035200--Sobic002G131700 Sobic010G035200--Sobic001G083100 Sobic001G122400 Sobic001G122400 Sobic010G035200--Sobic001G122400 Sobic008G039600 Sobic008G039600 Sobic010G035200--Sobic008G039600 Sobic009G131600 Sobic009G131600 Sobic010G035200--Sobic009G131600 Sobic004G164100 Sobic004G164100 Sobic010G035200--Sobic004G164100 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic003G221700--Sobic002G251400 Sobic003G221700--Sobic002G131700 Sobic003G245800 Sobic003G245800 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic001G469933--Sobic001G122400 Sobic001G368500 Sobic001G368500 Sobic001G469933--Sobic001G368500 Sobic001G469933--Sobic003G324700 Sobic003G077400 Sobic003G077400 Sobic001G469933--Sobic003G077400 Sobic001G469933--Sobic006G055800 Sobic001G469933--Sobic003G432500 Sobic004G335800 Sobic004G335800 Sobic001G469933--Sobic004G335800 Sobic001G469933--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic001G469933--Sobic005G110400 Sobic001G083100--Sobic005G002900 Sobic001G083100--Sobic009G148500 Sobic001G083100--Sobic008G039600 Sobic001G083100--Sobic001G469933 Sobic001G083100--Sobic006G055800 Sobic002G272100 Sobic002G272100 Sobic001G083100--Sobic002G272100 Sobic003G372900 Sobic003G372900 Sobic001G083100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic001G083100--Sobic001G054100 Sobic008G073100 Sobic008G073100 Sobic001G083100--Sobic008G073100
Octagon: transcription factors


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