Gene annotation
Transcriptome id Sobic.001G196200.1
Synonym Sb01g017260
Functional annotation CRS1/YhbY domain containing protein, expressed
UniProt C5WW81
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G21350 : RNA-binding CRS1 / YhbY (CRM) domain protein
RAP-DB (Rice) LOC_Os10g36860.1 : CRS1/YhbY domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017434 , Zm00025a041650
Brachypodium KQJ97405
Barley HORVU1Hr1G047180.3
Wheat TraesCS1D02G176300
Populus -


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cDNA sequences
Sobic.001G196200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G056800 YGGT family protein, putative, expressed -
2 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
3 Sobic.003G254600 expressed protein -
4 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
6 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
7 Sobic.009G028400 expressed protein -
8 Sobic.004G179200 expressed protein -
9 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
10 Sobic.001G447700 expressed protein -
11 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
12 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
13 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
14 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -
15 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
16 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
17 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
18 Sobic.008G130900 ribosomal protein S6, putative, expressed -
19 Sobic.006G256600 expressed protein -
20 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -


Gene co-expression network
sample Sobic001G196200 Sobic001G196200 Sobic002G056800 Sobic002G056800 Sobic001G196200--Sobic002G056800 Sobic002G131700 Sobic002G131700 Sobic001G196200--Sobic002G131700 Sobic003G254600 Sobic003G254600 Sobic001G196200--Sobic003G254600 Sobic003G310100 Sobic003G310100 Sobic001G196200--Sobic003G310100 Sobic006G111600 Sobic006G111600 Sobic001G196200--Sobic006G111600 Sobic005G002900 Sobic005G002900 Sobic001G196200--Sobic005G002900 Sobic009G028400 Sobic009G028400 Sobic001G196200--Sobic009G028400 Sobic004G179200 Sobic004G179200 Sobic001G196200--Sobic004G179200 Sobic002G424100 Sobic002G424100 Sobic001G196200--Sobic002G424100 Sobic002G056800--Sobic001G196200 Sobic002G056800--Sobic003G310100 Sobic002G056800--Sobic002G424100 Sobic002G056800--Sobic005G002900 Sobic009G131600 Sobic009G131600 Sobic002G056800--Sobic009G131600 Sobic006G055800 Sobic006G055800 Sobic002G056800--Sobic006G055800 Sobic003G085000 Sobic003G085000 Sobic002G056800--Sobic003G085000 Sobic002G056800--Sobic002G131700 Sobic001G281500 Sobic001G281500 Sobic002G056800--Sobic001G281500 Sobic002G131700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic002G131700--Sobic003G330100 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic001G469933 Sobic001G469933 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic003G254600--Sobic001G196200 Sobic001G035800 Sobic001G035800 Sobic003G254600--Sobic001G035800 Sobic006G107600 Sobic006G107600 Sobic003G254600--Sobic006G107600 Sobic003G421400 Sobic003G421400 Sobic003G254600--Sobic003G421400 Sobic009G055800 Sobic009G055800 Sobic003G254600--Sobic009G055800 Sobic001G489800 Sobic001G489800 Sobic003G254600--Sobic001G489800 Sobic001G447700 Sobic001G447700 Sobic003G254600--Sobic001G447700 Sobic001G469900 Sobic001G469900 Sobic003G254600--Sobic001G469900 Sobic007G085800 Sobic007G085800 Sobic003G254600--Sobic007G085800 Sobic001G424300 Sobic001G424300 Sobic003G310100--Sobic001G424300 Sobic003G310100--Sobic002G056800 Sobic003G310100--Sobic001G196200 Sobic003G310100--Sobic001G489800 Sobic001G437200 Sobic001G437200 Sobic003G310100--Sobic001G437200 Sobic003G310100--Sobic001G281500 Sobic006G237100 Sobic006G237100 Sobic003G310100--Sobic006G237100 Sobic003G310100--Sobic002G424100 Sobic003G310100--Sobic006G111600 Sobic006G111600--Sobic003G330100 Sobic006G111600--Sobic003G221700 Sobic006G111600--Sobic002G131700 Sobic006G111600--Sobic004G179200 Sobic009G234200 Sobic009G234200 Sobic006G111600--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic006G111600--Sobic004G250200 Sobic010G183400 Sobic010G183400 Sobic006G111600--Sobic010G183400 Sobic006G197700 Sobic006G197700 Sobic006G111600--Sobic006G197700 Sobic006G111600--Sobic009G028400 Sobic005G002900--Sobic001G083100 Sobic005G002900--Sobic006G055800 Sobic009G148500 Sobic009G148500 Sobic005G002900--Sobic009G148500 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic005G002900--Sobic006G106400 Sobic003G432500 Sobic003G432500 Sobic005G002900--Sobic003G432500 Sobic003G232700 Sobic003G232700 Sobic005G002900--Sobic003G232700 Sobic005G002900--Sobic002G131700 Sobic001G006000 Sobic001G006000 Sobic009G028400--Sobic001G006000 Sobic001G339100 Sobic001G339100 Sobic009G028400--Sobic001G339100 Sobic009G028400--Sobic006G111600 Sobic005G021600 Sobic005G021600 Sobic009G028400--Sobic005G021600 Sobic009G028400--Sobic003G221700 Sobic009G028400--Sobic003G330100 Sobic007G178500 Sobic007G178500 Sobic009G028400--Sobic007G178500 Sobic009G028400--Sobic004G179200 Sobic009G028400--Sobic003G310100 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic002G297400 Sobic002G297400 Sobic004G179200--Sobic002G297400 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic004G179200--Sobic009G234200 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100 Sobic002G424100--Sobic003G085000 Sobic002G424100--Sobic005G002900 Sobic002G424100--Sobic002G056800 Sobic002G424100--Sobic002G131700 Sobic002G424100--Sobic003G310100 Sobic002G424100--Sobic006G111600 Sobic001G531400 Sobic001G531400 Sobic002G424100--Sobic001G531400 Sobic002G424100--Sobic009G028400 Sobic002G424100--Sobic001G291900
Octagon: transcription factors


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