Gene annotation
Transcriptome id Sobic.001G489800.2
Synonym Sb01g045830
Functional annotation HNH endonuclease domain-containing protein, putative, expressed
UniProt A0A1Z5SB65
Pfam PF01844
Panther DB PTHR33427 PTHR33427:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004519; endonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G47490 : HNH endonuclease
RAP-DB (Rice) LOC_Os03g07370.1 : HNH endonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000852
Brachypodium KQK23431
Barley HORVU4Hr1G074980.1
Wheat TraesCS4B02G286500 , TraesCS4A02G017600 , TraesCS4D02G285200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
2 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.003G254600 expressed protein -
4 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
6 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
7 Sobic.001G196200 CRS1/YhbY domain containing protein, expressed -
8 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.001G010800 methionyl-tRNA synthetase, putative, expressed -
11 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
12 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.002G056800 YGGT family protein, putative, expressed -
14 Sobic.004G040600 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
15 Sobic.008G063200 expressed protein -
16 Sobic.004G179200 expressed protein -
17 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
18 Sobic.001G037500 expressed protein -
19 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
20 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -


Gene co-expression network
sample Sobic001G489800 Sobic001G489800 Sobic001G424300 Sobic001G424300 Sobic001G489800--Sobic001G424300 Sobic003G310100 Sobic003G310100 Sobic001G489800--Sobic003G310100 Sobic003G254600 Sobic003G254600 Sobic001G489800--Sobic003G254600 Sobic001G281500 Sobic001G281500 Sobic001G489800--Sobic001G281500 Sobic006G273400 Sobic006G273400 Sobic001G489800--Sobic006G273400 Sobic002G081500 Sobic002G081500 Sobic001G489800--Sobic002G081500 Sobic001G196200 Sobic001G196200 Sobic001G489800--Sobic001G196200 Sobic002G297400 Sobic002G297400 Sobic001G489800--Sobic002G297400 Sobic003G128400 Sobic003G128400 Sobic001G489800--Sobic003G128400 Sobic001G424300--Sobic003G310100 Sobic001G424300--Sobic001G489800 Sobic001G424300--Sobic003G128400 Sobic009G131600 Sobic009G131600 Sobic001G424300--Sobic009G131600 Sobic001G424300--Sobic001G281500 Sobic005G002900 Sobic005G002900 Sobic001G424300--Sobic005G002900 Sobic006G055800 Sobic006G055800 Sobic001G424300--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic001G424300--Sobic002G156100 Sobic001G437200 Sobic001G437200 Sobic001G424300--Sobic001G437200 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic003G310100--Sobic001G196200 Sobic003G310100--Sobic001G489800 Sobic003G310100--Sobic001G437200 Sobic003G310100--Sobic001G281500 Sobic006G237100 Sobic006G237100 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600 Sobic003G254600--Sobic001G196200 Sobic001G035800 Sobic001G035800 Sobic003G254600--Sobic001G035800 Sobic006G107600 Sobic006G107600 Sobic003G254600--Sobic006G107600 Sobic003G421400 Sobic003G421400 Sobic003G254600--Sobic003G421400 Sobic009G055800 Sobic009G055800 Sobic003G254600--Sobic009G055800 Sobic003G254600--Sobic001G489800 Sobic001G447700 Sobic001G447700 Sobic003G254600--Sobic001G447700 Sobic001G469900 Sobic001G469900 Sobic003G254600--Sobic001G469900 Sobic007G085800 Sobic007G085800 Sobic003G254600--Sobic007G085800 Sobic001G281500--Sobic006G237100 Sobic007G116100 Sobic007G116100 Sobic001G281500--Sobic007G116100 Sobic001G281500--Sobic006G107600 Sobic001G099000 Sobic001G099000 Sobic001G281500--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic001G281500--Sobic001G375000 Sobic007G171800 Sobic007G171800 Sobic001G281500--Sobic007G171800 Sobic006G263800 Sobic006G263800 Sobic001G281500--Sobic006G263800 Sobic010G027200 Sobic010G027200 Sobic001G281500--Sobic010G027200 Sobic005G184300 Sobic005G184300 Sobic001G281500--Sobic005G184300 Sobic001G037500 Sobic001G037500 Sobic006G273400--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic006G273400--Sobic001G054100 Sobic004G206200 Sobic004G206200 Sobic006G273400--Sobic004G206200 Sobic006G273400--Sobic001G099000 Sobic006G273400--Sobic002G081500 Sobic003G084500 Sobic003G084500 Sobic006G273400--Sobic003G084500 Sobic006G273400--Sobic002G297400 Sobic004G179200 Sobic004G179200 Sobic006G273400--Sobic004G179200 Sobic008G078900 Sobic008G078900 Sobic006G273400--Sobic008G078900 Sobic002G081500--Sobic001G099000 Sobic001G469933 Sobic001G469933 Sobic002G081500--Sobic001G469933 Sobic002G081500--Sobic005G184300 Sobic002G081500--Sobic006G055800 Sobic002G081500--Sobic002G297400 Sobic005G110400 Sobic005G110400 Sobic002G081500--Sobic005G110400 Sobic004G020800 Sobic004G020800 Sobic002G081500--Sobic004G020800 Sobic002G081500--Sobic001G037500 Sobic002G158800 Sobic002G158800 Sobic002G081500--Sobic002G158800 Sobic001G196200--Sobic002G056800 Sobic002G131700 Sobic002G131700 Sobic001G196200--Sobic002G131700 Sobic001G196200--Sobic003G254600 Sobic001G196200--Sobic003G310100 Sobic001G196200--Sobic006G111600 Sobic001G196200--Sobic005G002900 Sobic009G028400 Sobic009G028400 Sobic001G196200--Sobic009G028400 Sobic001G196200--Sobic004G179200 Sobic001G196200--Sobic002G424100 Sobic002G297400--Sobic004G179200 Sobic002G297400--Sobic006G055800 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic001G122400 Sobic001G122400 Sobic002G297400--Sobic001G122400 Sobic002G297400--Sobic005G184300 Sobic003G324700 Sobic003G324700 Sobic002G297400--Sobic003G324700 Sobic003G439000 Sobic003G439000 Sobic002G297400--Sobic003G439000 Sobic002G297400--Sobic006G107600 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G045300 Sobic003G045300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic004G003900 Sobic004G003900 Sobic003G128400--Sobic004G003900 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100
Octagon: transcription factors


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