Gene annotation
Transcriptome id Sobic.001G010800.1
Synonym Sb01g001060
Functional annotation methionyl-tRNA synthetase, putative, expressed
UniProt C5WSV2
Pfam PF01588
Panther DB PTHR11586 PTHR11586:SF18
NCBI CDD KOG2241; tRNA-binding protein
KEGG Orthology -
Gene Ontology GO:0000049; tRNA binding


Orthologs (automatic annotation)
TAIR AT3G59980 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os04g23820.1 : methionyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a055556
Brachypodium KQK20623 , KQK20622 , KQK20621 , KQK20620
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
2 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
3 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.001G037500 expressed protein -
5 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.002G056800 YGGT family protein, putative, expressed -
7 Sobic.008G130900 ribosomal protein S6, putative, expressed -
8 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
9 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
10 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
12 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
13 Sobic.006G166500 expressed protein -
14 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
15 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
16 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
17 Sobic.008G089500 Fe-S metabolism associated domain containing protein, expressed K03517: quinolinate synthase
18 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
20 Sobic.009G092900 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase


Gene co-expression network
sample Sobic001G010800 Sobic001G010800 Sobic001G489800 Sobic001G489800 Sobic001G010800--Sobic001G489800 Sobic001G375000 Sobic001G375000 Sobic001G010800--Sobic001G375000 Sobic003G310100 Sobic003G310100 Sobic001G010800--Sobic003G310100 Sobic001G037500 Sobic001G037500 Sobic001G010800--Sobic001G037500 Sobic003G128400 Sobic003G128400 Sobic001G010800--Sobic003G128400 Sobic002G056800 Sobic002G056800 Sobic001G010800--Sobic002G056800 Sobic008G130900 Sobic008G130900 Sobic001G010800--Sobic008G130900 Sobic003G327200 Sobic003G327200 Sobic001G010800--Sobic003G327200 Sobic004G003900 Sobic004G003900 Sobic001G010800--Sobic004G003900 Sobic001G424300 Sobic001G424300 Sobic001G489800--Sobic001G424300 Sobic001G489800--Sobic003G310100 Sobic003G254600 Sobic003G254600 Sobic001G489800--Sobic003G254600 Sobic001G281500 Sobic001G281500 Sobic001G489800--Sobic001G281500 Sobic006G273400 Sobic006G273400 Sobic001G489800--Sobic006G273400 Sobic002G081500 Sobic002G081500 Sobic001G489800--Sobic002G081500 Sobic001G196200 Sobic001G196200 Sobic001G489800--Sobic001G196200 Sobic002G297400 Sobic002G297400 Sobic001G489800--Sobic002G297400 Sobic001G489800--Sobic003G128400 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic003G310100--Sobic001G424300 Sobic003G310100--Sobic002G056800 Sobic003G310100--Sobic001G196200 Sobic003G310100--Sobic001G489800 Sobic001G437200 Sobic001G437200 Sobic003G310100--Sobic001G437200 Sobic003G310100--Sobic001G281500 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600 Sobic002G042500 Sobic002G042500 Sobic001G037500--Sobic002G042500 Sobic001G054100 Sobic001G054100 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic001G037500--Sobic004G206200 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic002G056800--Sobic001G196200 Sobic002G056800--Sobic003G310100 Sobic002G056800--Sobic002G424100 Sobic005G002900 Sobic005G002900 Sobic002G056800--Sobic005G002900 Sobic009G131600 Sobic009G131600 Sobic002G056800--Sobic009G131600 Sobic002G056800--Sobic006G055800 Sobic003G085000 Sobic003G085000 Sobic002G056800--Sobic003G085000 Sobic002G131700 Sobic002G131700 Sobic002G056800--Sobic002G131700 Sobic002G056800--Sobic001G281500 Sobic008G130900--Sobic001G375000 Sobic008G130900--Sobic006G055800 Sobic008G130900--Sobic003G128400 Sobic008G130900--Sobic005G002900 Sobic008G130900--Sobic009G131600 Sobic003G432500 Sobic003G432500 Sobic008G130900--Sobic003G432500 Sobic002G181000 Sobic002G181000 Sobic008G130900--Sobic002G181000 Sobic001G083100 Sobic001G083100 Sobic008G130900--Sobic001G083100 Sobic008G130900--Sobic002G131700 Sobic003G327200--Sobic003G162800 Sobic003G327200--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G327200--Sobic001G003900 Sobic004G263200 Sobic004G263200 Sobic003G327200--Sobic004G263200 Sobic003G327200--Sobic003G128400 Sobic001G514100 Sobic001G514100 Sobic003G327200--Sobic001G514100 Sobic007G116100 Sobic007G116100 Sobic003G327200--Sobic007G116100 Sobic003G327200--Sobic010G027200 Sobic001G022500 Sobic001G022500 Sobic003G327200--Sobic001G022500 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic004G003900--Sobic001G003900
Octagon: transcription factors


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