Gene annotation
Transcriptome id Sobic.003G327200.1
Synonym ATCDPMEK, CDPMEK, Sb03g037310, PDE277, ISPE
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt A0A1B6Q6M3
Pfam PF00288
Panther DB PTHR20861 PTHR20861:SF2
NCBI CDD -
KEGG Orthology K00919; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Gene Ontology GO:0005524; ATP binding GO:0016114terpenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G26930 : 4-(cytidine 5\'-phospho)-2-C-methyl-D-erithritol kinase
RAP-DB (Rice) LOC_Os01g58790.2 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a027179
Brachypodium KQK10197
Barley -
Wheat TraesCS3B02G361100 , TraesCS3A02G331000 , TraesCS3D02G324400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G327200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G162800 expressed protein -
2 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
3 Sobic.001G003900 pentatricopeptide, putative, expressed -
4 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
5 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.007G116100 thioredoxin, putative, expressed -
8 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
10 Sobic.004G225600 - -
11 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
12 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
13 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
14 Sobic.007G015300 calreticulin family protein, expressed -
15 Sobic.007G101300 expressed protein -
16 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
17 Sobic.001G099000 expressed protein -
18 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
19 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
20 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A


Gene co-expression network
sample Sobic003G327200 Sobic003G327200 Sobic003G162800 Sobic003G162800 Sobic003G327200--Sobic003G162800 Sobic001G375000 Sobic001G375000 Sobic003G327200--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G327200--Sobic001G003900 Sobic004G263200 Sobic004G263200 Sobic003G327200--Sobic004G263200 Sobic003G128400 Sobic003G128400 Sobic003G327200--Sobic003G128400 Sobic001G514100 Sobic001G514100 Sobic003G327200--Sobic001G514100 Sobic007G116100 Sobic007G116100 Sobic003G327200--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic003G327200--Sobic010G027200 Sobic001G022500 Sobic001G022500 Sobic003G327200--Sobic001G022500 Sobic003G162800--Sobic001G375000 Sobic003G162800--Sobic003G327200 Sobic002G156100 Sobic002G156100 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic002G181132 Sobic002G181132 Sobic003G162800--Sobic002G181132 Sobic004G003900 Sobic004G003900 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic005G184300 Sobic005G184300 Sobic001G003900--Sobic005G184300 Sobic001G003900--Sobic003G045300 Sobic001G099000 Sobic001G099000 Sobic001G003900--Sobic001G099000 Sobic001G003900--Sobic001G375000 Sobic001G382800 Sobic001G382800 Sobic001G003900--Sobic001G382800 Sobic001G003900--Sobic003G128400 Sobic007G015300 Sobic007G015300 Sobic001G003900--Sobic007G015300 Sobic001G003900--Sobic004G003900 Sobic001G003900--Sobic010G027200 Sobic004G263200--Sobic003G162800 Sobic004G263200--Sobic003G327200 Sobic004G263200--Sobic004G003900 Sobic004G214400 Sobic004G214400 Sobic004G263200--Sobic004G214400 Sobic007G101300 Sobic007G101300 Sobic004G263200--Sobic007G101300 Sobic005G197300 Sobic005G197300 Sobic004G263200--Sobic005G197300 Sobic004G263200--Sobic003G128400 Sobic004G263200--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic004G263200--Sobic002G140000 Sobic003G128400--Sobic001G375000 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic001G514100--Sobic003G162800 Sobic001G281500 Sobic001G281500 Sobic001G514100--Sobic001G281500 Sobic001G514100--Sobic003G327200 Sobic001G514100--Sobic005G197300 Sobic001G514100--Sobic001G375000 Sobic001G514100--Sobic003G128400 Sobic001G494500 Sobic001G494500 Sobic001G514100--Sobic001G494500 Sobic001G514100--Sobic002G297400 Sobic001G514100--Sobic001G382800 Sobic007G116100--Sobic010G027200 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic006G263800 Sobic006G263800 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic004G338300 Sobic004G338300 Sobic007G116100--Sobic004G338300 Sobic005G022800 Sobic005G022800 Sobic007G116100--Sobic005G022800 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic003G434700 Sobic003G434700 Sobic001G022500--Sobic003G434700 Sobic004G225600 Sobic004G225600 Sobic001G022500--Sobic004G225600 Sobic001G022500--Sobic004G003900 Sobic001G022500--Sobic003G162800 Sobic001G022500--Sobic001G003900 Sobic003G067100 Sobic003G067100 Sobic001G022500--Sobic003G067100 Sobic001G022500--Sobic001G375000 Sobic001G022500--Sobic001G099000 Sobic001G022500--Sobic003G327200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.