Gene annotation
Transcriptome id Sobic.003G040000.1
Synonym HRS1, ATHRS1, Sb03g003570
Functional annotation tRNA synthetase class II core domain containing protein, expressed
UniProt C5XMM1
Pfam PF03129 PF00587
Panther DB PTHR11476 PTHR11476:SF5
NCBI CDD KOG1936; Histidyl-tRNA synthetase
KEGG Orthology K01892; HARS, histidyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G46100 : Histidyl-tRNA synthetase 1
RAP-DB (Rice) LOC_Os02g51830.1 : tRNA synthetase class II core domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023147
Brachypodium KQJ91660
Barley HORVU2Hr1G018890.2
Wheat TraesCS2A02G530800 , TraesCS2D02G532700 , TraesCS2B02G560200
Populus PNT31253 , PNT31252


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
2 Sobic.002G293600 cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
3 Sobic.009G127400 PAC, putative, expressed -
4 Sobic.003G162800 expressed protein -
5 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
6 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
7 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
8 Sobic.003G149300 pentatricopeptide, putative, expressed -
9 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
10 Sobic.002G181132 - -
11 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
12 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
13 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
14 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
15 Sobic.001G166600 semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00145: N-acetyl-gamma-glutamyl-phosphate reductase
16 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
17 Sobic.004G225600 - -
18 Sobic.010G098200 peroxidase family protein, expressed -
19 Sobic.007G002300 protein kinase family protein, putative, expressed K17535: serine/threonine-protein kinase TNNI3K
20 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic003G040000 Sobic003G040000 Sobic006G058100 Sobic006G058100 Sobic003G040000--Sobic006G058100 Sobic002G293600 Sobic002G293600 Sobic003G040000--Sobic002G293600 Sobic009G127400 Sobic009G127400 Sobic003G040000--Sobic009G127400 Sobic003G162800 Sobic003G162800 Sobic003G040000--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic003G040000--Sobic003G327200 Sobic003G434700 Sobic003G434700 Sobic003G040000--Sobic003G434700 Sobic007G076700 Sobic007G076700 Sobic003G040000--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic003G040000--Sobic003G149300 Sobic001G022500 Sobic001G022500 Sobic003G040000--Sobic001G022500 Sobic002G143500 Sobic002G143500 Sobic006G058100--Sobic002G143500 Sobic003G067100 Sobic003G067100 Sobic006G058100--Sobic003G067100 Sobic006G058100--Sobic003G040000 Sobic001G166600 Sobic001G166600 Sobic006G058100--Sobic001G166600 Sobic004G236400 Sobic004G236400 Sobic006G058100--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic001G382800 Sobic001G382800 Sobic002G293600--Sobic001G382800 Sobic002G293600--Sobic003G067100 Sobic002G293600--Sobic003G040000 Sobic002G293600--Sobic003G149300 Sobic009G129100 Sobic009G129100 Sobic002G293600--Sobic009G129100 Sobic007G095500 Sobic007G095500 Sobic002G293600--Sobic007G095500 Sobic002G293600--Sobic006G058100 Sobic003G128400 Sobic003G128400 Sobic002G293600--Sobic003G128400 Sobic002G293600--Sobic003G434700 Sobic009G127400--Sobic003G040000 Sobic007G069400 Sobic007G069400 Sobic009G127400--Sobic007G069400 Sobic001G037500 Sobic001G037500 Sobic009G127400--Sobic001G037500 Sobic009G127400--Sobic007G076700 Sobic009G127400--Sobic003G149300 Sobic002G114700 Sobic002G114700 Sobic009G127400--Sobic002G114700 Sobic005G197300 Sobic005G197300 Sobic009G127400--Sobic005G197300 Sobic009G127400--Sobic003G327200 Sobic009G127400--Sobic001G261573 Sobic001G375000 Sobic001G375000 Sobic003G162800--Sobic001G375000 Sobic003G162800--Sobic003G327200 Sobic002G156100 Sobic002G156100 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic002G181132 Sobic002G181132 Sobic003G162800--Sobic002G181132 Sobic004G003900 Sobic004G003900 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic010G027200 Sobic010G027200 Sobic003G162800--Sobic010G027200 Sobic003G327200--Sobic003G162800 Sobic003G327200--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G327200--Sobic001G003900 Sobic004G263200 Sobic004G263200 Sobic003G327200--Sobic004G263200 Sobic003G327200--Sobic003G128400 Sobic003G327200--Sobic001G514100 Sobic007G116100 Sobic007G116100 Sobic003G327200--Sobic007G116100 Sobic003G327200--Sobic010G027200 Sobic003G327200--Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic003G434700--Sobic004G225600 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic004G035000 Sobic004G035000 Sobic007G076700--Sobic004G035000 Sobic001G031300 Sobic001G031300 Sobic007G076700--Sobic001G031300 Sobic002G209600 Sobic002G209600 Sobic007G076700--Sobic002G209600 Sobic007G076700--Sobic003G040000 Sobic007G076700--Sobic009G127400 Sobic004G142700 Sobic004G142700 Sobic007G076700--Sobic004G142700 Sobic003G112700 Sobic003G112700 Sobic007G076700--Sobic003G112700 Sobic007G076700--Sobic002G114700 Sobic001G354501 Sobic001G354501 Sobic007G076700--Sobic001G354501 Sobic003G149300--Sobic002G293600 Sobic003G149300--Sobic003G040000 Sobic003G149300--Sobic009G127400 Sobic003G161000 Sobic003G161000 Sobic003G149300--Sobic003G161000 Sobic003G149300--Sobic001G514100 Sobic003G155300 Sobic003G155300 Sobic003G149300--Sobic003G155300 Sobic003G149300--Sobic005G197300 Sobic003G149300--Sobic001G261573 Sobic003G149300--Sobic009G129100 Sobic001G022500--Sobic003G434700 Sobic001G022500--Sobic004G225600 Sobic001G022500--Sobic004G003900 Sobic001G022500--Sobic003G162800 Sobic001G022500--Sobic001G003900 Sobic001G022500--Sobic003G067100 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic001G022500--Sobic003G327200
Octagon: transcription factors


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