Gene annotation
Transcriptome id Sobic.003G149300.1,Sobic.003G149300.2,Sobic.003G149300.3,Sobic.003G149300.4
Synonym Sb03g012960
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6Q3A5 , A0A1B6Q398 , A0A1B6Q395
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF149
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT4G38380 : MATE efflux family protein
RAP-DB (Rice) LOC_Os02g58620.1,LOC_Os09g37610.1 : pentatricopeptide, putative, expressed,MATE efflux protein, putative, expressed
MaizeGDB (Corn) Zm00025a024341
Brachypodium PNT69747
Barley HORVU6Hr1G095270.3 , HORVU6Hr1G095270.19 , HORVU6Hr1G095270.11 , HORVU6Hr1G095270.10 , HORVU6Hr1G095270.13 , HORVU6Hr1G095270.12 , HORVU6Hr1G095270.15 , HORVU6Hr1G095270.17 , HORVU6Hr1G095270.16 , HORVU6Hr1G095270.9 , HORVU6Hr1G095270.8 , HORVU6Hr1G095270.5 , HORVU6Hr1G095270.4 , HORVU6Hr1G095270.7 , HORVU6Hr1G095270.6 , HORVU6Hr1G095270.1 , HORVU6Hr1G095270.14 , HORVU6Hr1G095270.18 , HORVU1Hr1G085680.2 , HORVU1Hr1G085680.3 , HORVU1Hr1G085680.1
Wheat TraesCS6B02G470700 , TraesCS6B02G470700 , TraesCS6A02G418800 , TraesCS6A02G418800 , TraesCS4B02G322300 , TraesCS7D02G031100 , TraesCS6D02G407900
Populus -


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cDNA sequences
Sobic.003G149300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G293600 cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
2 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
3 Sobic.009G127400 PAC, putative, expressed -
4 Sobic.003G161000 powdery mildew resistance protein PM3F, putative, expressed -
5 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.003G155300 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
7 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
8 Sobic.001G261573 - -
9 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
10 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
11 Sobic.008G082900 histidine triad family protein, putative, expressed -
12 Sobic.002G209600 CBS domain containing protein, expressed -
13 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
14 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
15 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
16 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
18 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
19 Sobic.001G354501 - K07877: Ras-related protein Rab-2A
20 Sobic.001G037500 expressed protein -


Gene co-expression network
sample Sobic003G149300 Sobic003G149300 Sobic002G293600 Sobic002G293600 Sobic003G149300--Sobic002G293600 Sobic003G040000 Sobic003G040000 Sobic003G149300--Sobic003G040000 Sobic009G127400 Sobic009G127400 Sobic003G149300--Sobic009G127400 Sobic003G161000 Sobic003G161000 Sobic003G149300--Sobic003G161000 Sobic001G514100 Sobic001G514100 Sobic003G149300--Sobic001G514100 Sobic003G155300 Sobic003G155300 Sobic003G149300--Sobic003G155300 Sobic005G197300 Sobic005G197300 Sobic003G149300--Sobic005G197300 Sobic001G261573 Sobic001G261573 Sobic003G149300--Sobic001G261573 Sobic009G129100 Sobic009G129100 Sobic003G149300--Sobic009G129100 Sobic001G382800 Sobic001G382800 Sobic002G293600--Sobic001G382800 Sobic003G067100 Sobic003G067100 Sobic002G293600--Sobic003G067100 Sobic002G293600--Sobic003G040000 Sobic002G293600--Sobic003G149300 Sobic002G293600--Sobic009G129100 Sobic007G095500 Sobic007G095500 Sobic002G293600--Sobic007G095500 Sobic006G058100 Sobic006G058100 Sobic002G293600--Sobic006G058100 Sobic003G128400 Sobic003G128400 Sobic002G293600--Sobic003G128400 Sobic003G434700 Sobic003G434700 Sobic002G293600--Sobic003G434700 Sobic003G040000--Sobic006G058100 Sobic003G040000--Sobic002G293600 Sobic003G040000--Sobic009G127400 Sobic003G162800 Sobic003G162800 Sobic003G040000--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic003G040000--Sobic003G327200 Sobic003G040000--Sobic003G434700 Sobic007G076700 Sobic007G076700 Sobic003G040000--Sobic007G076700 Sobic003G040000--Sobic003G149300 Sobic001G022500 Sobic001G022500 Sobic003G040000--Sobic001G022500 Sobic009G127400--Sobic003G040000 Sobic007G069400 Sobic007G069400 Sobic009G127400--Sobic007G069400 Sobic001G037500 Sobic001G037500 Sobic009G127400--Sobic001G037500 Sobic009G127400--Sobic007G076700 Sobic009G127400--Sobic003G149300 Sobic002G114700 Sobic002G114700 Sobic009G127400--Sobic002G114700 Sobic009G127400--Sobic005G197300 Sobic009G127400--Sobic003G327200 Sobic009G127400--Sobic001G261573 Sobic004G001300 Sobic004G001300 Sobic003G161000--Sobic004G001300 Sobic003G161000--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic003G161000--Sobic010G176550 Sobic002G031400 Sobic002G031400 Sobic003G161000--Sobic002G031400 Sobic003G442700 Sobic003G442700 Sobic003G161000--Sobic003G442700 Sobic003G003600 Sobic003G003600 Sobic003G161000--Sobic003G003600 Sobic003G161000--Sobic003G149300 Sobic005G039500 Sobic005G039500 Sobic003G161000--Sobic005G039500 Sobic002G402600 Sobic002G402600 Sobic003G161000--Sobic002G402600 Sobic001G514100--Sobic003G162800 Sobic001G281500 Sobic001G281500 Sobic001G514100--Sobic001G281500 Sobic001G514100--Sobic003G327200 Sobic001G514100--Sobic005G197300 Sobic001G375000 Sobic001G375000 Sobic001G514100--Sobic001G375000 Sobic001G514100--Sobic003G128400 Sobic001G494500 Sobic001G494500 Sobic001G514100--Sobic001G494500 Sobic002G297400 Sobic002G297400 Sobic001G514100--Sobic002G297400 Sobic001G514100--Sobic001G382800 Sobic003G155300--Sobic009G129100 Sobic002G148750 Sobic002G148750 Sobic003G155300--Sobic002G148750 Sobic003G155300--Sobic002G293600 Sobic001G227200 Sobic001G227200 Sobic003G155300--Sobic001G227200 Sobic003G155300--Sobic003G149300 Sobic004G185800 Sobic004G185800 Sobic003G155300--Sobic004G185800 Sobic002G425500 Sobic002G425500 Sobic003G155300--Sobic002G425500 Sobic006G194400 Sobic006G194400 Sobic003G155300--Sobic006G194400 Sobic008G092532 Sobic008G092532 Sobic003G155300--Sobic008G092532 Sobic005G022800 Sobic005G022800 Sobic005G197300--Sobic005G022800 Sobic005G197300--Sobic001G514100 Sobic001G099000 Sobic001G099000 Sobic005G197300--Sobic001G099000 Sobic004G255500 Sobic004G255500 Sobic005G197300--Sobic004G255500 Sobic006G273400 Sobic006G273400 Sobic005G197300--Sobic006G273400 Sobic004G263200 Sobic004G263200 Sobic005G197300--Sobic004G263200 Sobic005G197300--Sobic001G022500 Sobic002G209600 Sobic002G209600 Sobic005G197300--Sobic002G209600 Sobic004G225600 Sobic004G225600 Sobic005G197300--Sobic004G225600 Sobic003G254000 Sobic003G254000 Sobic001G261573--Sobic003G254000 Sobic007G185700 Sobic007G185700 Sobic001G261573--Sobic007G185700 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic001G261573--Sobic005G039500 Sobic001G261573--Sobic006G058100 Sobic003G234900 Sobic003G234900 Sobic001G261573--Sobic003G234900 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700
Octagon: transcription factors


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