Gene annotation
Transcriptome id Sobic.002G296100.5,Sobic.002G296100.2,Sobic.002G296100.1,Sobic.002G296100.4,Sobic.002G296100.3
Synonym Sb02g032730
Functional annotation mTERF domain containing protein, expressed
UniProt A0A1W0W6A7 , C5X8D7 , A0A1W0W6G2
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF3
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G78930 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os09g38720.1 : mTERF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047881 , Zm00025a000001
Brachypodium PNT65138 , KQJ91473
Barley HORVU5Hr1G089290.19 , HORVU5Hr1G089290.18 , HORVU5Hr1G089290.11 , HORVU5Hr1G089290.10 , HORVU5Hr1G089290.13 , HORVU5Hr1G089290.12 , HORVU5Hr1G089290.15 , HORVU5Hr1G089290.14 , HORVU5Hr1G089290.17 , HORVU5Hr1G089290.16 , HORVU5Hr1G089290.9 , HORVU5Hr1G089290.8 , HORVU5Hr1G089290.4 , HORVU5Hr1G089290.3 , HORVU5Hr1G089290.2 , HORVU5Hr1G089290.5 , HORVU5Hr1G089290.7 , HORVU5Hr1G089290.6 , HORVU5Hr1G089290.24 , HORVU5Hr1G089290.25 , HORVU5Hr1G089290.20 , HORVU5Hr1G089290.21 , HORVU5Hr1G089290.22 , HORVU5Hr1G089290.23 , HORVU0Hr1G013680.1
Wheat TraesCS5B02G365700 , TraesCS5D02G372800 , TraesCS5A02G363600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
2 Sobic.001G037500 expressed protein -
3 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
4 Sobic.004G020800 dimethyladenosine transferase, putative, expressed -
5 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
6 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
7 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
8 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
9 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
10 Sobic.007G015300 calreticulin family protein, expressed -
11 Sobic.004G225600 - -
12 Sobic.002G424900 MAG2, putative, expressed -
13 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
14 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
15 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
16 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
18 Sobic.002G431400 - -
19 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
20 Sobic.004G019500 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G296100 Sobic002G296100 Sobic002G042500 Sobic002G042500 Sobic002G296100--Sobic002G042500 Sobic001G037500 Sobic001G037500 Sobic002G296100--Sobic001G037500 Sobic002G347600 Sobic002G347600 Sobic002G296100--Sobic002G347600 Sobic004G020800 Sobic004G020800 Sobic002G296100--Sobic004G020800 Sobic003G434700 Sobic003G434700 Sobic002G296100--Sobic003G434700 Sobic004G206200 Sobic004G206200 Sobic002G296100--Sobic004G206200 Sobic006G128300 Sobic006G128300 Sobic002G296100--Sobic006G128300 Sobic002G081500 Sobic002G081500 Sobic002G296100--Sobic002G081500 Sobic001G022500 Sobic001G022500 Sobic002G296100--Sobic001G022500 Sobic002G042500--Sobic001G037500 Sobic003G150800 Sobic003G150800 Sobic002G042500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic002G042500--Sobic005G111550 Sobic002G042500--Sobic004G206200 Sobic003G085100 Sobic003G085100 Sobic002G042500--Sobic003G085100 Sobic003G141100 Sobic003G141100 Sobic002G042500--Sobic003G141100 Sobic002G042500--Sobic002G296100 Sobic007G185700 Sobic007G185700 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300 Sobic001G037500--Sobic002G042500 Sobic001G054100 Sobic001G054100 Sobic001G037500--Sobic001G054100 Sobic006G273400 Sobic006G273400 Sobic001G037500--Sobic006G273400 Sobic001G037500--Sobic003G150800 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic001G037500--Sobic002G296100 Sobic006G038500 Sobic006G038500 Sobic002G347600--Sobic006G038500 Sobic003G301300 Sobic003G301300 Sobic002G347600--Sobic003G301300 Sobic004G336200 Sobic004G336200 Sobic002G347600--Sobic004G336200 Sobic008G091400 Sobic008G091400 Sobic002G347600--Sobic008G091400 Sobic002G347600--Sobic006G128300 Sobic003G247400 Sobic003G247400 Sobic002G347600--Sobic003G247400 Sobic002G347600--Sobic003G141100 Sobic004G328400 Sobic004G328400 Sobic002G347600--Sobic004G328400 Sobic009G121000 Sobic009G121000 Sobic002G347600--Sobic009G121000 Sobic004G020800--Sobic002G081500 Sobic004G020800--Sobic001G037500 Sobic004G020800--Sobic002G042500 Sobic003G128400 Sobic003G128400 Sobic004G020800--Sobic003G128400 Sobic004G020800--Sobic002G296100 Sobic004G020800--Sobic003G150800 Sobic004G020800--Sobic001G054100 Sobic004G020800--Sobic007G185700 Sobic004G225600 Sobic004G225600 Sobic004G020800--Sobic004G225600 Sobic003G434700--Sobic001G022500 Sobic003G067100 Sobic003G067100 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic004G206200--Sobic002G042500 Sobic004G206200--Sobic001G037500 Sobic004G206200--Sobic001G054100 Sobic004G206200--Sobic006G273400 Sobic004G206200--Sobic003G141100 Sobic004G206200--Sobic007G185700 Sobic009G223200 Sobic009G223200 Sobic004G206200--Sobic009G223200 Sobic004G206200--Sobic005G111550 Sobic006G210400 Sobic006G210400 Sobic004G206200--Sobic006G210400 Sobic002G218500 Sobic002G218500 Sobic006G128300--Sobic002G218500 Sobic004G079800 Sobic004G079800 Sobic006G128300--Sobic004G079800 Sobic006G128300--Sobic006G038500 Sobic002G431300 Sobic002G431300 Sobic006G128300--Sobic002G431300 Sobic006G128300--Sobic002G347600 Sobic006G128300--Sobic002G042500 Sobic008G001900 Sobic008G001900 Sobic006G128300--Sobic008G001900 Sobic006G128300--Sobic001G126300 Sobic006G031800 Sobic006G031800 Sobic006G128300--Sobic006G031800 Sobic001G099000 Sobic001G099000 Sobic002G081500--Sobic001G099000 Sobic001G469933 Sobic001G469933 Sobic002G081500--Sobic001G469933 Sobic005G184300 Sobic005G184300 Sobic002G081500--Sobic005G184300 Sobic006G055800 Sobic006G055800 Sobic002G081500--Sobic006G055800 Sobic002G297400 Sobic002G297400 Sobic002G081500--Sobic002G297400 Sobic005G110400 Sobic005G110400 Sobic002G081500--Sobic005G110400 Sobic002G081500--Sobic004G020800 Sobic002G081500--Sobic001G037500 Sobic002G158800 Sobic002G158800 Sobic002G081500--Sobic002G158800 Sobic001G022500--Sobic003G434700 Sobic001G022500--Sobic004G225600 Sobic004G003900 Sobic004G003900 Sobic001G022500--Sobic004G003900 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic001G022500--Sobic003G067100 Sobic001G022500--Sobic001G375000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200
Octagon: transcription factors


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