Gene annotation
Transcriptome id Sobic.006G273400.1
Synonym Sb06g033480
Functional annotation pentatricopeptide repeat protein, putative, expressed
UniProt C5YAP4
Pfam PF00076 PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF274
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G04810 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os04g58780.1 : pentatricopeptide repeat protein, putative, expressed
MaizeGDB (Corn) Zm00025a057423
Brachypodium KQJ85376
Barley -
Wheat TraesCS2D02G597500 , TraesCS2D02G597500 , TraesCS2D02G597500 , TraesCS2B02G603800 , TraesCS2B02G603800 , TraesCS2B02G603800 , TraesCS2A02G582700 , TraesCS2A02G582700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G037500 expressed protein -
2 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
3 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
4 Sobic.001G099000 expressed protein -
5 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
6 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
7 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.004G179200 expressed protein -
9 Sobic.008G078900 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
10 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
11 Sobic.007G069400 pentatricopeptide, putative, expressed -
12 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
13 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
14 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
15 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.007G015300 calreticulin family protein, expressed -
17 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
18 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
19 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
20 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -


Gene co-expression network
sample Sobic006G273400 Sobic006G273400 Sobic001G037500 Sobic001G037500 Sobic006G273400--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic006G273400--Sobic001G054100 Sobic004G206200 Sobic004G206200 Sobic006G273400--Sobic004G206200 Sobic001G099000 Sobic001G099000 Sobic006G273400--Sobic001G099000 Sobic002G081500 Sobic002G081500 Sobic006G273400--Sobic002G081500 Sobic003G084500 Sobic003G084500 Sobic006G273400--Sobic003G084500 Sobic002G297400 Sobic002G297400 Sobic006G273400--Sobic002G297400 Sobic004G179200 Sobic004G179200 Sobic006G273400--Sobic004G179200 Sobic008G078900 Sobic008G078900 Sobic006G273400--Sobic008G078900 Sobic002G042500 Sobic002G042500 Sobic001G037500--Sobic002G042500 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic003G141100 Sobic003G141100 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic004G206200--Sobic002G042500 Sobic004G206200--Sobic001G037500 Sobic004G206200--Sobic001G054100 Sobic004G206200--Sobic006G273400 Sobic004G206200--Sobic003G141100 Sobic004G206200--Sobic007G185700 Sobic009G223200 Sobic009G223200 Sobic004G206200--Sobic009G223200 Sobic004G206200--Sobic005G111550 Sobic006G210400 Sobic006G210400 Sobic004G206200--Sobic006G210400 Sobic002G158800 Sobic002G158800 Sobic001G099000--Sobic002G158800 Sobic005G184300 Sobic005G184300 Sobic001G099000--Sobic005G184300 Sobic007G015300 Sobic007G015300 Sobic001G099000--Sobic007G015300 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic010G027200 Sobic010G027200 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic002G081500--Sobic001G099000 Sobic001G469933 Sobic001G469933 Sobic002G081500--Sobic001G469933 Sobic002G081500--Sobic005G184300 Sobic006G055800 Sobic006G055800 Sobic002G081500--Sobic006G055800 Sobic002G081500--Sobic002G297400 Sobic005G110400 Sobic005G110400 Sobic002G081500--Sobic005G110400 Sobic004G020800 Sobic004G020800 Sobic002G081500--Sobic004G020800 Sobic002G081500--Sobic001G037500 Sobic002G081500--Sobic002G158800 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic009G234200 Sobic009G234200 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic010G183400 Sobic010G183400 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic003G084500--Sobic001G054100 Sobic002G297400--Sobic004G179200 Sobic002G297400--Sobic006G055800 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic001G122400 Sobic001G122400 Sobic002G297400--Sobic001G122400 Sobic002G297400--Sobic005G184300 Sobic003G324700 Sobic003G324700 Sobic002G297400--Sobic003G324700 Sobic003G439000 Sobic003G439000 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600 Sobic004G179200--Sobic002G131700 Sobic003G221700 Sobic003G221700 Sobic004G179200--Sobic003G221700 Sobic004G179200--Sobic002G297400 Sobic004G179200--Sobic001G469933 Sobic004G179200--Sobic003G439000 Sobic006G111600 Sobic006G111600 Sobic004G179200--Sobic006G111600 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic003G330100 Sobic003G330100 Sobic004G179200--Sobic003G330100 Sobic008G078900--Sobic006G273400 Sobic002G114700 Sobic002G114700 Sobic008G078900--Sobic002G114700 Sobic003G114100 Sobic003G114100 Sobic008G078900--Sobic003G114100 Sobic003G170200 Sobic003G170200 Sobic008G078900--Sobic003G170200 Sobic005G111500 Sobic005G111500 Sobic008G078900--Sobic005G111500 Sobic008G078900--Sobic001G037500 Sobic008G078900--Sobic003G084500 Sobic007G205600 Sobic007G205600 Sobic008G078900--Sobic007G205600 Sobic008G063200 Sobic008G063200 Sobic008G078900--Sobic008G063200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.