Gene annotation
Transcriptome id Sobic.009G223200.1
Synonym Sb09g027686, EMB1865
Functional annotation chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
UniProt A0A1B6P9Y5
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF4
NCBI CDD KOG1990; Poly(A)-specific exoribonuclease PARN
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G18390 : CRS1 / YhbY (CRM) domain-containing protein
RAP-DB (Rice) LOC_Os05g47850.1 : chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a044475
Brachypodium KQK05018 , KQK05017 , KQK05016
Barley HORVU1Hr1G083550.10 , HORVU1Hr1G083550.4 , HORVU1Hr1G083550.5 , HORVU1Hr1G083550.2 , HORVU1Hr1G083550.3 , HORVU1Hr1G083550.6 , HORVU1Hr1G083550.7 , HORVU1Hr1G083550.8 , HORVU1Hr1G083550.9
Wheat TraesCS1B02G396800 , TraesCS1A02G376400 , TraesCS1D02G383500 , TraesCS1B02G396800
Populus -


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cDNA sequences
Sobic.009G223200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
2 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
3 Sobic.001G461700 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
4 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G037500 expressed protein -
6 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
7 Sobic.008G130900 ribosomal protein S6, putative, expressed -
8 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
9 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
10 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
11 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
12 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
13 Sobic.004G333400 COBW domain containing protein, putative, expressed -
14 Sobic.002G331800 PPR repeat containing protein, expressed -
15 Sobic.003G334100 zinc finger family protein, putative, expressed -
16 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
17 Sobic.004G179200 expressed protein -
18 Sobic.005G111550 - -
19 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
20 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -


Gene co-expression network
sample Sobic009G223200 Sobic009G223200 Sobic003G084500 Sobic003G084500 Sobic009G223200--Sobic003G084500 Sobic006G273400 Sobic006G273400 Sobic009G223200--Sobic006G273400 Sobic001G461700 Sobic001G461700 Sobic009G223200--Sobic001G461700 Sobic004G206200 Sobic004G206200 Sobic009G223200--Sobic004G206200 Sobic001G037500 Sobic001G037500 Sobic009G223200--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic009G223200--Sobic001G054100 Sobic008G130900 Sobic008G130900 Sobic009G223200--Sobic008G130900 Sobic002G181000 Sobic002G181000 Sobic009G223200--Sobic002G181000 Sobic002G042500 Sobic002G042500 Sobic009G223200--Sobic002G042500 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic009G234200 Sobic009G234200 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic010G183400 Sobic010G183400 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic003G084500--Sobic001G054100 Sobic006G273400--Sobic001G037500 Sobic006G273400--Sobic001G054100 Sobic006G273400--Sobic004G206200 Sobic001G099000 Sobic001G099000 Sobic006G273400--Sobic001G099000 Sobic002G081500 Sobic002G081500 Sobic006G273400--Sobic002G081500 Sobic006G273400--Sobic003G084500 Sobic002G297400 Sobic002G297400 Sobic006G273400--Sobic002G297400 Sobic004G179200 Sobic004G179200 Sobic006G273400--Sobic004G179200 Sobic008G078900 Sobic008G078900 Sobic006G273400--Sobic008G078900 Sobic008G039600 Sobic008G039600 Sobic001G461700--Sobic008G039600 Sobic001G461700--Sobic009G223200 Sobic001G461700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic001G461700--Sobic002G043600 Sobic007G123600 Sobic007G123600 Sobic001G461700--Sobic007G123600 Sobic003G432500 Sobic003G432500 Sobic001G461700--Sobic003G432500 Sobic009G024300 Sobic009G024300 Sobic001G461700--Sobic009G024300 Sobic001G461700--Sobic002G131700 Sobic003G075100 Sobic003G075100 Sobic001G461700--Sobic003G075100 Sobic004G206200--Sobic002G042500 Sobic004G206200--Sobic001G037500 Sobic004G206200--Sobic001G054100 Sobic004G206200--Sobic006G273400 Sobic003G141100 Sobic003G141100 Sobic004G206200--Sobic003G141100 Sobic007G185700 Sobic007G185700 Sobic004G206200--Sobic007G185700 Sobic004G206200--Sobic009G223200 Sobic005G111550 Sobic005G111550 Sobic004G206200--Sobic005G111550 Sobic006G210400 Sobic006G210400 Sobic004G206200--Sobic006G210400 Sobic001G037500--Sobic002G042500 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic001G054100--Sobic007G185700 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic001G375000 Sobic001G375000 Sobic008G130900--Sobic001G375000 Sobic006G055800 Sobic006G055800 Sobic008G130900--Sobic006G055800 Sobic003G128400 Sobic003G128400 Sobic008G130900--Sobic003G128400 Sobic005G002900 Sobic005G002900 Sobic008G130900--Sobic005G002900 Sobic009G131600 Sobic009G131600 Sobic008G130900--Sobic009G131600 Sobic008G130900--Sobic003G432500 Sobic008G130900--Sobic002G181000 Sobic008G130900--Sobic001G083100 Sobic008G130900--Sobic002G131700 Sobic003G232700 Sobic003G232700 Sobic002G181000--Sobic003G232700 Sobic001G500600 Sobic001G500600 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic002G042500--Sobic001G037500 Sobic002G042500--Sobic003G150800 Sobic002G042500--Sobic005G111550 Sobic002G042500--Sobic004G206200 Sobic003G085100 Sobic003G085100 Sobic002G042500--Sobic003G085100 Sobic002G042500--Sobic003G141100 Sobic002G042500--Sobic002G296100 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300
Octagon: transcription factors


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