Gene annotation
Transcriptome id Sobic.001G461700.1
Synonym OVA1, Sb01g043330
Functional annotation methionyl-tRNA synthetase, putative, expressed
UniProt C5WTP7
Pfam PF00133
Panther DB PTHR11946 PTHR11946:SF89
NCBI CDD -
KEGG Orthology K01874; MARS, methionyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT3G55400 : methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)
RAP-DB (Rice) LOC_Os03g11120.1 : methionyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a001087
Brachypodium KQK22996
Barley HORVU4Hr1G069130.4 , HORVU4Hr1G069130.3 , HORVU4Hr1G069130.2 , HORVU4Hr1G069130.1
Wheat TraesCS4D02G252700 , TraesCS4D02G252700 , TraesCS4A02G051900 , TraesCS4A02G051900 , TraesCS4B02G252400 , TraesCS4B02G252400 , TraesCS4B02G252400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
2 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
3 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
4 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
5 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
6 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
7 Sobic.009G024300 inner membrane protein alx, putative, expressed -
8 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
9 Sobic.003G075100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
10 Sobic.008G130900 ribosomal protein S6, putative, expressed -
11 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
12 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
13 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
14 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
15 Sobic.004G333400 COBW domain containing protein, putative, expressed -
16 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
17 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
18 Sobic.003G334100 zinc finger family protein, putative, expressed -
19 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
20 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -


Gene co-expression network
sample Sobic001G461700 Sobic001G461700 Sobic008G039600 Sobic008G039600 Sobic001G461700--Sobic008G039600 Sobic009G223200 Sobic009G223200 Sobic001G461700--Sobic009G223200 Sobic002G181000 Sobic002G181000 Sobic001G461700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic001G461700--Sobic002G043600 Sobic007G123600 Sobic007G123600 Sobic001G461700--Sobic007G123600 Sobic003G432500 Sobic003G432500 Sobic001G461700--Sobic003G432500 Sobic009G024300 Sobic009G024300 Sobic001G461700--Sobic009G024300 Sobic002G131700 Sobic002G131700 Sobic001G461700--Sobic002G131700 Sobic003G075100 Sobic003G075100 Sobic001G461700--Sobic003G075100 Sobic005G143500 Sobic005G143500 Sobic008G039600--Sobic005G143500 Sobic001G083100 Sobic001G083100 Sobic008G039600--Sobic001G083100 Sobic006G106400 Sobic006G106400 Sobic008G039600--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic008G039600--Sobic002G401800 Sobic002G272100 Sobic002G272100 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic001G368500 Sobic001G368500 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic008G039600--Sobic002G181000 Sobic003G084500 Sobic003G084500 Sobic009G223200--Sobic003G084500 Sobic006G273400 Sobic006G273400 Sobic009G223200--Sobic006G273400 Sobic009G223200--Sobic001G461700 Sobic004G206200 Sobic004G206200 Sobic009G223200--Sobic004G206200 Sobic001G037500 Sobic001G037500 Sobic009G223200--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic009G223200--Sobic001G054100 Sobic008G130900 Sobic008G130900 Sobic009G223200--Sobic008G130900 Sobic009G223200--Sobic002G181000 Sobic002G042500 Sobic002G042500 Sobic009G223200--Sobic002G042500 Sobic003G232700 Sobic003G232700 Sobic002G181000--Sobic003G232700 Sobic001G500600 Sobic001G500600 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic002G043600--Sobic003G232700 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic003G151500 Sobic003G151500 Sobic007G123600--Sobic003G151500 Sobic006G055800 Sobic006G055800 Sobic007G123600--Sobic006G055800 Sobic007G123600--Sobic002G043600 Sobic004G119500 Sobic004G119500 Sobic007G123600--Sobic004G119500 Sobic007G123600--Sobic002G181000 Sobic002G200200 Sobic002G200200 Sobic007G123600--Sobic002G200200 Sobic007G123600--Sobic003G432500 Sobic007G123600--Sobic001G461700 Sobic004G338300 Sobic004G338300 Sobic007G123600--Sobic004G338300 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic001G469933 Sobic001G469933 Sobic003G432500--Sobic001G469933 Sobic003G271900 Sobic003G271900 Sobic003G432500--Sobic003G271900 Sobic005G110400 Sobic005G110400 Sobic003G432500--Sobic005G110400 Sobic003G324700 Sobic003G324700 Sobic003G432500--Sobic003G324700 Sobic008G073100 Sobic008G073100 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic002G152800 Sobic002G152800 Sobic003G432500--Sobic002G152800 Sobic009G024300--Sobic001G516901 Sobic002G258600 Sobic002G258600 Sobic009G024300--Sobic002G258600 Sobic004G328400 Sobic004G328400 Sobic009G024300--Sobic004G328400 Sobic009G024300--Sobic003G151500 Sobic009G024300--Sobic001G500600 Sobic007G162600 Sobic007G162600 Sobic009G024300--Sobic007G162600 Sobic003G287900 Sobic003G287900 Sobic009G024300--Sobic003G287900 Sobic003G085100 Sobic003G085100 Sobic009G024300--Sobic003G085100 Sobic005G063000 Sobic005G063000 Sobic009G024300--Sobic005G063000 Sobic004G179200 Sobic004G179200 Sobic002G131700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic002G131700--Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic002G131700--Sobic001G469933 Sobic002G131700--Sobic001G083100 Sobic003G075100--Sobic009G223200 Sobic003G075100--Sobic001G461700 Sobic009G137000 Sobic009G137000 Sobic003G075100--Sobic009G137000 Sobic009G234200 Sobic009G234200 Sobic003G075100--Sobic009G234200 Sobic003G039300 Sobic003G039300 Sobic003G075100--Sobic003G039300 Sobic003G075100--Sobic003G084500 Sobic003G075100--Sobic002G131700 Sobic004G276500 Sobic004G276500 Sobic003G075100--Sobic004G276500 Sobic006G110200 Sobic006G110200 Sobic003G075100--Sobic006G110200
Octagon: transcription factors


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