Gene annotation
Transcriptome id Sobic.003G075100.1
Synonym Sb03g006340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
mitochondrial glycoprotein, putative, expressed
UniProt C5XQ31
Pfam PF02330
Panther DB PTHR10826 PTHR10826:SF15
NCBI CDD KOG2536; MAM33, mitochondrial matrix glycoprotein
KEGG Orthology K15414; complement component 1 Q subcomponent-binding protein, mitochondrial
Gene Ontology GO:0005759; mitochondrial matrix


Orthologs (automatic annotation)
TAIR AT3G55605 : Mitochondrial glycoprotein family protein
RAP-DB (Rice) LOC_Os01g05060.1 : mitochondrial glycoprotein, putative, expressed
MaizeGDB (Corn) Zm00025a035611
Brachypodium -
Barley HORVU3Hr1G011560.1 , HORVU3Hr1G011560.2 , HORVU3Hr1G011560.3 , HORVU3Hr1G011560.4
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
2 Sobic.001G461700 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
3 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
4 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
5 Sobic.003G039300 expressed protein -
6 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
7 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
8 Sobic.004G276500 expressed protein K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
9 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
10 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
11 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
12 Sobic.007G015300 calreticulin family protein, expressed -
13 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
14 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
15 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
16 Sobic.007G069400 pentatricopeptide, putative, expressed -
17 Sobic.003G342700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
18 Sobic.001G037500 expressed protein -
19 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
20 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic003G075100 Sobic003G075100 Sobic009G223200 Sobic009G223200 Sobic003G075100--Sobic009G223200 Sobic001G461700 Sobic001G461700 Sobic003G075100--Sobic001G461700 Sobic009G137000 Sobic009G137000 Sobic003G075100--Sobic009G137000 Sobic009G234200 Sobic009G234200 Sobic003G075100--Sobic009G234200 Sobic003G039300 Sobic003G039300 Sobic003G075100--Sobic003G039300 Sobic003G084500 Sobic003G084500 Sobic003G075100--Sobic003G084500 Sobic002G131700 Sobic002G131700 Sobic003G075100--Sobic002G131700 Sobic004G276500 Sobic004G276500 Sobic003G075100--Sobic004G276500 Sobic006G110200 Sobic006G110200 Sobic003G075100--Sobic006G110200 Sobic009G223200--Sobic003G084500 Sobic006G273400 Sobic006G273400 Sobic009G223200--Sobic006G273400 Sobic009G223200--Sobic001G461700 Sobic004G206200 Sobic004G206200 Sobic009G223200--Sobic004G206200 Sobic001G037500 Sobic001G037500 Sobic009G223200--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic009G223200--Sobic001G054100 Sobic008G130900 Sobic008G130900 Sobic009G223200--Sobic008G130900 Sobic002G181000 Sobic002G181000 Sobic009G223200--Sobic002G181000 Sobic002G042500 Sobic002G042500 Sobic009G223200--Sobic002G042500 Sobic008G039600 Sobic008G039600 Sobic001G461700--Sobic008G039600 Sobic001G461700--Sobic009G223200 Sobic001G461700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic001G461700--Sobic002G043600 Sobic007G123600 Sobic007G123600 Sobic001G461700--Sobic007G123600 Sobic003G432500 Sobic003G432500 Sobic001G461700--Sobic003G432500 Sobic009G024300 Sobic009G024300 Sobic001G461700--Sobic009G024300 Sobic001G461700--Sobic002G131700 Sobic001G461700--Sobic003G075100 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic002G404900 Sobic002G404900 Sobic009G137000--Sobic002G404900 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G233800 Sobic009G233800 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic009G137000--Sobic006G110200 Sobic006G237100 Sobic006G237100 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic010G183400 Sobic010G183400 Sobic009G234200--Sobic010G183400 Sobic003G330100 Sobic003G330100 Sobic009G234200--Sobic003G330100 Sobic004G250200 Sobic004G250200 Sobic009G234200--Sobic004G250200 Sobic006G204100 Sobic006G204100 Sobic009G234200--Sobic006G204100 Sobic003G245800 Sobic003G245800 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic003G039300--Sobic006G110200 Sobic003G039300--Sobic003G084500 Sobic007G069400 Sobic007G069400 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic001G537700 Sobic001G537700 Sobic003G039300--Sobic001G537700 Sobic003G039300--Sobic009G137000 Sobic010G211500 Sobic010G211500 Sobic003G039300--Sobic010G211500 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic003G084500--Sobic010G183400 Sobic003G084500--Sobic002G131700 Sobic003G084500--Sobic001G054100 Sobic002G131700--Sobic004G179200 Sobic002G131700--Sobic003G330100 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic005G002900 Sobic005G002900 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic001G469933 Sobic001G469933 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic001G469900 Sobic001G469900 Sobic004G276500--Sobic001G469900 Sobic002G297400 Sobic002G297400 Sobic004G276500--Sobic002G297400 Sobic004G276500--Sobic003G286300 Sobic006G107600 Sobic006G107600 Sobic004G276500--Sobic006G107600 Sobic001G514100 Sobic001G514100 Sobic004G276500--Sobic001G514100 Sobic001G196200 Sobic001G196200 Sobic004G276500--Sobic001G196200 Sobic004G276500--Sobic004G179200 Sobic001G281500 Sobic001G281500 Sobic004G276500--Sobic001G281500 Sobic004G276500--Sobic002G131700 Sobic006G110200--Sobic003G039300 Sobic006G110200--Sobic007G069400 Sobic002G140000 Sobic002G140000 Sobic006G110200--Sobic002G140000 Sobic006G110200--Sobic001G537700 Sobic006G110200--Sobic009G137000 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.