Gene annotation
Transcriptome id Sobic.004G276500.2,Sobic.004G276500.3
Synonym Sb04g031340
Functional annotation expressed protein
UniProt A0A194YS13 , A0A1Z5RPS1
Pfam PF00861
Panther DB PTHR12899 PTHR12899:SF7
NCBI CDD KOG3333; Mitochondrial/chloroplast ribosomal protein L18
KEGG Orthology K02881; RP-L18, MRPL18, large subunit ribosomal protein L18
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G20230 : Ribosomal L18p/L5e family protein
RAP-DB (Rice) LOC_Os02g46440.1,LOC_Os02g46440.4 : expressed protein
MaizeGDB (Corn) Zm00025a021586
Brachypodium KQK00829 , KQK00830
Barley HORVU6Hr1G066780.2 , HORVU6Hr1G066780.1
Wheat TraesCS6D02G243700
Populus -


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cDNA sequences
Sobic.004G276500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -
2 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
4 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
5 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.001G196200 CRS1/YhbY domain containing protein, expressed -
7 Sobic.004G179200 expressed protein -
8 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
10 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
11 Sobic.008G078900 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
12 Sobic.002G056800 YGGT family protein, putative, expressed -
13 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
14 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
15 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
16 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
17 Sobic.001G455500 pentatricopeptide repeat domain containing protein, putative, expressed -
18 Sobic.003G254600 expressed protein -
19 Sobic.001G037500 expressed protein -
20 Sobic.003G075100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial


Gene co-expression network
sample Sobic004G276500 Sobic004G276500 Sobic001G469900 Sobic001G469900 Sobic004G276500--Sobic001G469900 Sobic002G297400 Sobic002G297400 Sobic004G276500--Sobic002G297400 Sobic003G286300 Sobic003G286300 Sobic004G276500--Sobic003G286300 Sobic006G107600 Sobic006G107600 Sobic004G276500--Sobic006G107600 Sobic001G514100 Sobic001G514100 Sobic004G276500--Sobic001G514100 Sobic001G196200 Sobic001G196200 Sobic004G276500--Sobic001G196200 Sobic004G179200 Sobic004G179200 Sobic004G276500--Sobic004G179200 Sobic001G281500 Sobic001G281500 Sobic004G276500--Sobic001G281500 Sobic002G131700 Sobic002G131700 Sobic004G276500--Sobic002G131700 Sobic003G439000 Sobic003G439000 Sobic001G469900--Sobic003G439000 Sobic009G055800 Sobic009G055800 Sobic001G469900--Sobic009G055800 Sobic001G469933 Sobic001G469933 Sobic001G469900--Sobic001G469933 Sobic001G168800 Sobic001G168800 Sobic001G469900--Sobic001G168800 Sobic001G469900--Sobic004G179200 Sobic001G183000 Sobic001G183000 Sobic001G469900--Sobic001G183000 Sobic001G134700 Sobic001G134700 Sobic001G469900--Sobic001G134700 Sobic003G151500 Sobic003G151500 Sobic001G469900--Sobic003G151500 Sobic003G077400 Sobic003G077400 Sobic001G469900--Sobic003G077400 Sobic002G297400--Sobic004G179200 Sobic006G055800 Sobic006G055800 Sobic002G297400--Sobic006G055800 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic001G122400 Sobic001G122400 Sobic002G297400--Sobic001G122400 Sobic005G184300 Sobic005G184300 Sobic002G297400--Sobic005G184300 Sobic003G324700 Sobic003G324700 Sobic002G297400--Sobic003G324700 Sobic002G297400--Sobic003G439000 Sobic002G297400--Sobic006G107600 Sobic001G450600 Sobic001G450600 Sobic003G286300--Sobic001G450600 Sobic003G084500 Sobic003G084500 Sobic003G286300--Sobic003G084500 Sobic009G234200 Sobic009G234200 Sobic003G286300--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G286300--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic003G286300--Sobic003G444500 Sobic003G286300--Sobic004G179200 Sobic003G286300--Sobic002G297400 Sobic003G439600 Sobic003G439600 Sobic003G286300--Sobic003G439600 Sobic003G330100 Sobic003G330100 Sobic003G286300--Sobic003G330100 Sobic003G256200 Sobic003G256200 Sobic006G107600--Sobic003G256200 Sobic001G240000 Sobic001G240000 Sobic006G107600--Sobic001G240000 Sobic007G171800 Sobic007G171800 Sobic006G107600--Sobic007G171800 Sobic001G040000 Sobic001G040000 Sobic006G107600--Sobic001G040000 Sobic001G391400 Sobic001G391400 Sobic006G107600--Sobic001G391400 Sobic002G305700 Sobic002G305700 Sobic006G107600--Sobic002G305700 Sobic006G107600--Sobic001G122400 Sobic001G191000 Sobic001G191000 Sobic006G107600--Sobic001G191000 Sobic001G453300 Sobic001G453300 Sobic006G107600--Sobic001G453300 Sobic003G162800 Sobic003G162800 Sobic001G514100--Sobic003G162800 Sobic001G514100--Sobic001G281500 Sobic003G327200 Sobic003G327200 Sobic001G514100--Sobic003G327200 Sobic005G197300 Sobic005G197300 Sobic001G514100--Sobic005G197300 Sobic001G375000 Sobic001G375000 Sobic001G514100--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic001G514100--Sobic003G128400 Sobic001G494500 Sobic001G494500 Sobic001G514100--Sobic001G494500 Sobic001G514100--Sobic002G297400 Sobic001G382800 Sobic001G382800 Sobic001G514100--Sobic001G382800 Sobic002G056800 Sobic002G056800 Sobic001G196200--Sobic002G056800 Sobic001G196200--Sobic002G131700 Sobic003G254600 Sobic003G254600 Sobic001G196200--Sobic003G254600 Sobic003G310100 Sobic003G310100 Sobic001G196200--Sobic003G310100 Sobic006G111600 Sobic006G111600 Sobic001G196200--Sobic006G111600 Sobic005G002900 Sobic005G002900 Sobic001G196200--Sobic005G002900 Sobic009G028400 Sobic009G028400 Sobic001G196200--Sobic009G028400 Sobic001G196200--Sobic004G179200 Sobic002G424100 Sobic002G424100 Sobic001G196200--Sobic002G424100 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic004G179200--Sobic002G297400 Sobic004G179200--Sobic001G469933 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic004G179200--Sobic009G234200 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100 Sobic006G237100 Sobic006G237100 Sobic001G281500--Sobic006G237100 Sobic007G116100 Sobic007G116100 Sobic001G281500--Sobic007G116100 Sobic001G281500--Sobic006G107600 Sobic001G099000 Sobic001G099000 Sobic001G281500--Sobic001G099000 Sobic001G281500--Sobic001G375000 Sobic001G281500--Sobic007G171800 Sobic006G263800 Sobic006G263800 Sobic001G281500--Sobic006G263800 Sobic010G027200 Sobic010G027200 Sobic001G281500--Sobic010G027200 Sobic001G281500--Sobic005G184300 Sobic002G131700--Sobic004G179200 Sobic002G131700--Sobic003G330100 Sobic002G131700--Sobic006G111600 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic002G131700--Sobic003G221700 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100
Octagon: transcription factors


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