Gene annotation
Transcriptome id Sobic.001G455500.1
Synonym Sb01g042790
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt C5WSS0
Pfam PF12854 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF437
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G16390 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os03g11670.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001318 , Zm00025a055919
Brachypodium KQK22875
Barley HORVU4Hr1G067600.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G439000 rubredoxin family protein, putative, expressed -
2 Sobic.004G179200 expressed protein -
3 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.001G186200 pentatricopeptide, putative, expressed -
5 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
6 Sobic.004G357300 uncharacterized ACR, COG1399 family protein, expressed -
7 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -
8 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
9 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
10 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
11 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
12 Sobic.004G025400 phosphatidate cytidylyltransferase, putative, expressed -
13 Sobic.001G168800 BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
14 Sobic.006G256600 expressed protein -
15 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
16 Sobic.004G253400 tic20 protein-related, putative, expressed -
17 Sobic.006G280800 expressed protein -
18 Sobic.009G055800 expressed protein -
19 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
20 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase


Gene co-expression network
sample Sobic001G455500 Sobic001G455500 Sobic003G439000 Sobic003G439000 Sobic001G455500--Sobic003G439000 Sobic004G179200 Sobic004G179200 Sobic001G455500--Sobic004G179200 Sobic002G297400 Sobic002G297400 Sobic001G455500--Sobic002G297400 Sobic001G186200 Sobic001G186200 Sobic001G455500--Sobic001G186200 Sobic001G006000 Sobic001G006000 Sobic001G455500--Sobic001G006000 Sobic004G357300 Sobic004G357300 Sobic001G455500--Sobic004G357300 Sobic001G469900 Sobic001G469900 Sobic001G455500--Sobic001G469900 Sobic006G210400 Sobic006G210400 Sobic001G455500--Sobic006G210400 Sobic001G001300 Sobic001G001300 Sobic001G455500--Sobic001G001300 Sobic003G439000--Sobic001G469900 Sobic001G469933 Sobic001G469933 Sobic003G439000--Sobic001G469933 Sobic001G168800 Sobic001G168800 Sobic003G439000--Sobic001G168800 Sobic003G439000--Sobic004G179200 Sobic001G122400 Sobic001G122400 Sobic003G439000--Sobic001G122400 Sobic009G055800 Sobic009G055800 Sobic003G439000--Sobic009G055800 Sobic001G368500 Sobic001G368500 Sobic003G439000--Sobic001G368500 Sobic003G439000--Sobic002G297400 Sobic003G439000--Sobic001G455500 Sobic002G131700 Sobic002G131700 Sobic004G179200--Sobic002G131700 Sobic003G221700 Sobic003G221700 Sobic004G179200--Sobic003G221700 Sobic004G179200--Sobic002G297400 Sobic004G179200--Sobic001G469933 Sobic004G179200--Sobic003G439000 Sobic006G111600 Sobic006G111600 Sobic004G179200--Sobic006G111600 Sobic009G234200 Sobic009G234200 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic003G330100 Sobic003G330100 Sobic004G179200--Sobic003G330100 Sobic002G297400--Sobic004G179200 Sobic006G055800 Sobic006G055800 Sobic002G297400--Sobic006G055800 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic002G297400--Sobic001G122400 Sobic005G184300 Sobic005G184300 Sobic002G297400--Sobic005G184300 Sobic003G324700 Sobic003G324700 Sobic002G297400--Sobic003G324700 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600 Sobic007G085800 Sobic007G085800 Sobic001G186200--Sobic007G085800 Sobic001G186200--Sobic003G439000 Sobic001G186200--Sobic001G455500 Sobic001G186200--Sobic006G210400 Sobic003G342200 Sobic003G342200 Sobic001G186200--Sobic003G342200 Sobic008G063200 Sobic008G063200 Sobic001G186200--Sobic008G063200 Sobic005G111500 Sobic005G111500 Sobic001G186200--Sobic005G111500 Sobic001G186200--Sobic001G168800 Sobic001G450600 Sobic001G450600 Sobic001G186200--Sobic001G450600 Sobic010G076800 Sobic010G076800 Sobic001G006000--Sobic010G076800 Sobic009G028400 Sobic009G028400 Sobic001G006000--Sobic009G028400 Sobic004G253400 Sobic004G253400 Sobic001G006000--Sobic004G253400 Sobic001G006000--Sobic008G063200 Sobic007G076900 Sobic007G076900 Sobic001G006000--Sobic007G076900 Sobic001G006000--Sobic004G179200 Sobic001G339100 Sobic001G339100 Sobic001G006000--Sobic001G339100 Sobic003G253300 Sobic003G253300 Sobic001G006000--Sobic003G253300 Sobic003G245800 Sobic003G245800 Sobic001G006000--Sobic003G245800 Sobic009G148500 Sobic009G148500 Sobic004G357300--Sobic009G148500 Sobic004G357300--Sobic006G210400 Sobic004G357300--Sobic002G297400 Sobic010G002000 Sobic010G002000 Sobic004G357300--Sobic010G002000 Sobic004G357300--Sobic001G001300 Sobic004G357300--Sobic001G455500 Sobic004G357300--Sobic005G002900 Sobic004G357300--Sobic001G469933 Sobic003G141100 Sobic003G141100 Sobic004G357300--Sobic003G141100 Sobic001G469900--Sobic003G439000 Sobic001G469900--Sobic009G055800 Sobic001G469900--Sobic001G469933 Sobic001G469900--Sobic001G168800 Sobic001G469900--Sobic004G179200 Sobic001G183000 Sobic001G183000 Sobic001G469900--Sobic001G183000 Sobic001G134700 Sobic001G134700 Sobic001G469900--Sobic001G134700 Sobic003G151500 Sobic003G151500 Sobic001G469900--Sobic003G151500 Sobic003G077400 Sobic003G077400 Sobic001G469900--Sobic003G077400 Sobic006G010900 Sobic006G010900 Sobic006G210400--Sobic006G010900 Sobic006G210400--Sobic007G085800 Sobic006G210400--Sobic006G256600 Sobic006G210400--Sobic003G141100 Sobic006G210400--Sobic002G297400 Sobic003G387100 Sobic003G387100 Sobic006G210400--Sobic003G387100 Sobic001G309300 Sobic001G309300 Sobic006G210400--Sobic001G309300 Sobic010G255100 Sobic010G255100 Sobic006G210400--Sobic010G255100 Sobic001G124800 Sobic001G124800 Sobic006G210400--Sobic001G124800 Sobic006G280800 Sobic006G280800 Sobic001G001300--Sobic006G280800 Sobic003G085100 Sobic003G085100 Sobic001G001300--Sobic003G085100 Sobic003G160800 Sobic003G160800 Sobic001G001300--Sobic003G160800 Sobic002G133900 Sobic002G133900 Sobic001G001300--Sobic002G133900 Sobic001G001300--Sobic009G148500 Sobic005G111550 Sobic005G111550 Sobic001G001300--Sobic005G111550 Sobic003G287900 Sobic003G287900 Sobic001G001300--Sobic003G287900 Sobic001G500600 Sobic001G500600 Sobic001G001300--Sobic001G500600 Sobic001G001300--Sobic001G134700
Octagon: transcription factors


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