Gene annotation
Transcriptome id Sobic.001G186200.1,Sobic.001G186200.6,Sobic.001G186200.7,Sobic.001G186200.5,Sobic.001G186200.3,Sobic.001G186200.2,Sobic.001G186200.4
Synonym Sb01g016180
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5S6B5 , A0A1Z5S6N4 , A0A1Z5S6C9 , A0A1Z5S6M0 , A0A1Z5S6A5 , A0A1Z5S6C7
Pfam PF12854 PF13041 PF01535 PF12854 PF13041 PF01535 PF13041 PF12854
Panther DB PTHR24015 PTHR24015:SF676
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os03g37260.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a007078 , Zm00025a017382
Brachypodium PNT74493
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
2 Sobic.003G439000 rubredoxin family protein, putative, expressed -
3 Sobic.001G455500 pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
5 Sobic.003G342200 dihydroflavonol-4-reductase, putative, expressed -
6 Sobic.008G063200 expressed protein -
7 Sobic.005G111500 FHA domain containing protein, putative, expressed -
8 Sobic.001G168800 BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
9 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
10 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
11 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.004G179200 expressed protein -
13 Sobic.003G254600 expressed protein -
14 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
15 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
17 Sobic.009G055800 expressed protein -
18 Sobic.006G256600 expressed protein -
19 Sobic.004G333400 COBW domain containing protein, putative, expressed -
20 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain


Gene co-expression network
sample Sobic001G186200 Sobic001G186200 Sobic007G085800 Sobic007G085800 Sobic001G186200--Sobic007G085800 Sobic003G439000 Sobic003G439000 Sobic001G186200--Sobic003G439000 Sobic001G455500 Sobic001G455500 Sobic001G186200--Sobic001G455500 Sobic006G210400 Sobic006G210400 Sobic001G186200--Sobic006G210400 Sobic003G342200 Sobic003G342200 Sobic001G186200--Sobic003G342200 Sobic008G063200 Sobic008G063200 Sobic001G186200--Sobic008G063200 Sobic005G111500 Sobic005G111500 Sobic001G186200--Sobic005G111500 Sobic001G168800 Sobic001G168800 Sobic001G186200--Sobic001G168800 Sobic001G450600 Sobic001G450600 Sobic001G186200--Sobic001G450600 Sobic007G085800--Sobic006G210400 Sobic006G010900 Sobic006G010900 Sobic007G085800--Sobic006G010900 Sobic003G412900 Sobic003G412900 Sobic007G085800--Sobic003G412900 Sobic008G116300 Sobic008G116300 Sobic007G085800--Sobic008G116300 Sobic001G069000 Sobic001G069000 Sobic007G085800--Sobic001G069000 Sobic003G387100 Sobic003G387100 Sobic007G085800--Sobic003G387100 Sobic010G214100 Sobic010G214100 Sobic007G085800--Sobic010G214100 Sobic007G085800--Sobic001G168800 Sobic007G085800--Sobic001G186200 Sobic001G469900 Sobic001G469900 Sobic003G439000--Sobic001G469900 Sobic001G469933 Sobic001G469933 Sobic003G439000--Sobic001G469933 Sobic003G439000--Sobic001G168800 Sobic004G179200 Sobic004G179200 Sobic003G439000--Sobic004G179200 Sobic001G122400 Sobic001G122400 Sobic003G439000--Sobic001G122400 Sobic009G055800 Sobic009G055800 Sobic003G439000--Sobic009G055800 Sobic001G368500 Sobic001G368500 Sobic003G439000--Sobic001G368500 Sobic002G297400 Sobic002G297400 Sobic003G439000--Sobic002G297400 Sobic003G439000--Sobic001G455500 Sobic001G455500--Sobic003G439000 Sobic001G455500--Sobic004G179200 Sobic001G455500--Sobic002G297400 Sobic001G455500--Sobic001G186200 Sobic001G006000 Sobic001G006000 Sobic001G455500--Sobic001G006000 Sobic004G357300 Sobic004G357300 Sobic001G455500--Sobic004G357300 Sobic001G455500--Sobic001G469900 Sobic001G455500--Sobic006G210400 Sobic001G001300 Sobic001G001300 Sobic001G455500--Sobic001G001300 Sobic006G210400--Sobic006G010900 Sobic006G210400--Sobic007G085800 Sobic006G256600 Sobic006G256600 Sobic006G210400--Sobic006G256600 Sobic003G141100 Sobic003G141100 Sobic006G210400--Sobic003G141100 Sobic006G210400--Sobic002G297400 Sobic006G210400--Sobic003G387100 Sobic001G309300 Sobic001G309300 Sobic006G210400--Sobic001G309300 Sobic010G255100 Sobic010G255100 Sobic006G210400--Sobic010G255100 Sobic001G124800 Sobic001G124800 Sobic006G210400--Sobic001G124800 Sobic006G050400 Sobic006G050400 Sobic003G342200--Sobic006G050400 Sobic003G253300 Sobic003G253300 Sobic003G342200--Sobic003G253300 Sobic001G175700 Sobic001G175700 Sobic003G342200--Sobic001G175700 Sobic006G155500 Sobic006G155500 Sobic003G342200--Sobic006G155500 Sobic001G122300 Sobic001G122300 Sobic003G342200--Sobic001G122300 Sobic003G378600 Sobic003G378600 Sobic003G342200--Sobic003G378600 Sobic002G112400 Sobic002G112400 Sobic003G342200--Sobic002G112400 Sobic006G125000 Sobic006G125000 Sobic003G342200--Sobic006G125000 Sobic002G102200 Sobic002G102200 Sobic003G342200--Sobic002G102200 Sobic008G063200--Sobic001G450600 Sobic006G110900 Sobic006G110900 Sobic008G063200--Sobic006G110900 Sobic006G214700 Sobic006G214700 Sobic008G063200--Sobic006G214700 Sobic008G063200--Sobic001G006000 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic004G333400 Sobic004G333400 Sobic008G063200--Sobic004G333400 Sobic008G063200--Sobic003G342200 Sobic005G111500--Sobic010G076800 Sobic008G183200 Sobic008G183200 Sobic005G111500--Sobic008G183200 Sobic009G062500 Sobic009G062500 Sobic005G111500--Sobic009G062500 Sobic005G111500--Sobic008G063200 Sobic005G111500--Sobic002G102200 Sobic007G076900 Sobic007G076900 Sobic005G111500--Sobic007G076900 Sobic005G111500--Sobic001G186200 Sobic005G111500--Sobic001G006000 Sobic003G037300 Sobic003G037300 Sobic005G111500--Sobic003G037300 Sobic001G168800--Sobic003G412900 Sobic001G168800--Sobic003G439000 Sobic001G134700 Sobic001G134700 Sobic001G168800--Sobic001G134700 Sobic001G168800--Sobic003G387100 Sobic004G227200 Sobic004G227200 Sobic001G168800--Sobic004G227200 Sobic001G168800--Sobic003G378600 Sobic006G101500 Sobic006G101500 Sobic001G168800--Sobic006G101500 Sobic001G168800--Sobic001G469900 Sobic001G168800--Sobic007G085800 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic001G450600--Sobic008G063200 Sobic010G183400 Sobic010G183400 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic002G331800 Sobic002G331800 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200
Octagon: transcription factors


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