Gene annotation
Transcriptome id Sobic.004G253400.2,Sobic.004G253400.1
Synonym
Functional annotation tic20 protein-related, putative, expressed
UniProt A0A194YSN3 , A0A1Z5RNZ9
Pfam PF16166
Panther DB PTHR33510 PTHR33510:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55710 : -
RAP-DB (Rice) LOC_Os02g49470.1 : tic20 protein-related, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK01513
Barley HORVU6Hr1G072310.1
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G253400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G175700 expressed protein -
3 Sobic.006G125000 expressed protein -
4 Sobic.003G342200 dihydroflavonol-4-reductase, putative, expressed -
5 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
6 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
7 Sobic.004G179200 expressed protein -
8 Sobic.004G012900 expressed protein -
9 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
10 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
11 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
12 Sobic.006G050400 expressed protein -
13 Sobic.002G198000 CRR6, putative, expressed -
14 Sobic.009G028400 expressed protein -
15 Sobic.001G283700 acyltransferase, putative, expressed K00630: glycerol-3-phosphate O-acyltransferase
16 Sobic.006G155500 expressed protein -
17 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
18 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
20 Sobic.004G326500 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G253400 Sobic004G253400 Sobic001G006000 Sobic001G006000 Sobic004G253400--Sobic001G006000 Sobic001G175700 Sobic001G175700 Sobic004G253400--Sobic001G175700 Sobic006G125000 Sobic006G125000 Sobic004G253400--Sobic006G125000 Sobic003G342200 Sobic003G342200 Sobic004G253400--Sobic003G342200 Sobic003G253300 Sobic003G253300 Sobic004G253400--Sobic003G253300 Sobic003G378600 Sobic003G378600 Sobic004G253400--Sobic003G378600 Sobic004G179200 Sobic004G179200 Sobic004G253400--Sobic004G179200 Sobic004G012900 Sobic004G012900 Sobic004G253400--Sobic004G012900 Sobic006G110900 Sobic006G110900 Sobic004G253400--Sobic006G110900 Sobic010G076800 Sobic010G076800 Sobic001G006000--Sobic010G076800 Sobic009G028400 Sobic009G028400 Sobic001G006000--Sobic009G028400 Sobic001G006000--Sobic004G253400 Sobic008G063200 Sobic008G063200 Sobic001G006000--Sobic008G063200 Sobic007G076900 Sobic007G076900 Sobic001G006000--Sobic007G076900 Sobic001G006000--Sobic004G179200 Sobic001G339100 Sobic001G339100 Sobic001G006000--Sobic001G339100 Sobic001G006000--Sobic003G253300 Sobic003G245800 Sobic003G245800 Sobic001G006000--Sobic003G245800 Sobic006G050400 Sobic006G050400 Sobic001G175700--Sobic006G050400 Sobic009G131800 Sobic009G131800 Sobic001G175700--Sobic009G131800 Sobic001G175700--Sobic004G012900 Sobic001G405700 Sobic001G405700 Sobic001G175700--Sobic001G405700 Sobic002G233700 Sobic002G233700 Sobic001G175700--Sobic002G233700 Sobic001G175700--Sobic003G342200 Sobic001G083100 Sobic001G083100 Sobic001G175700--Sobic001G083100 Sobic001G175700--Sobic004G253400 Sobic006G155500 Sobic006G155500 Sobic001G175700--Sobic006G155500 Sobic006G125000--Sobic003G342200 Sobic006G125000--Sobic001G175700 Sobic006G125000--Sobic009G131800 Sobic006G125000--Sobic006G050400 Sobic006G125000--Sobic006G110900 Sobic006G125000--Sobic004G253400 Sobic006G125000--Sobic001G006000 Sobic006G125000--Sobic009G028400 Sobic006G125000--Sobic003G253300 Sobic003G342200--Sobic006G050400 Sobic003G342200--Sobic003G253300 Sobic003G342200--Sobic001G175700 Sobic003G342200--Sobic006G155500 Sobic001G122300 Sobic001G122300 Sobic003G342200--Sobic001G122300 Sobic003G342200--Sobic003G378600 Sobic002G112400 Sobic002G112400 Sobic003G342200--Sobic002G112400 Sobic003G342200--Sobic006G125000 Sobic002G102200 Sobic002G102200 Sobic003G342200--Sobic002G102200 Sobic003G253300--Sobic003G342200 Sobic003G253300--Sobic006G110900 Sobic003G253300--Sobic006G155500 Sobic003G253300--Sobic006G050400 Sobic006G214700 Sobic006G214700 Sobic003G253300--Sobic006G214700 Sobic003G284800 Sobic003G284800 Sobic003G253300--Sobic003G284800 Sobic003G253300--Sobic008G063200 Sobic001G118400 Sobic001G118400 Sobic003G253300--Sobic001G118400 Sobic003G253300--Sobic010G076800 Sobic009G140600 Sobic009G140600 Sobic003G378600--Sobic009G140600 Sobic001G005200 Sobic001G005200 Sobic003G378600--Sobic001G005200 Sobic003G378600--Sobic004G012900 Sobic008G102000 Sobic008G102000 Sobic003G378600--Sobic008G102000 Sobic003G378600--Sobic001G122300 Sobic004G239100 Sobic004G239100 Sobic003G378600--Sobic004G239100 Sobic004G359600 Sobic004G359600 Sobic003G378600--Sobic004G359600 Sobic003G378600--Sobic002G233700 Sobic008G172700 Sobic008G172700 Sobic003G378600--Sobic008G172700 Sobic002G131700 Sobic002G131700 Sobic004G179200--Sobic002G131700 Sobic003G221700 Sobic003G221700 Sobic004G179200--Sobic003G221700 Sobic002G297400 Sobic002G297400 Sobic004G179200--Sobic002G297400 Sobic001G469933 Sobic001G469933 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic006G111600 Sobic006G111600 Sobic004G179200--Sobic006G111600 Sobic009G234200 Sobic009G234200 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic003G330100 Sobic003G330100 Sobic004G179200--Sobic003G330100 Sobic007G052400 Sobic007G052400 Sobic004G012900--Sobic007G052400 Sobic004G012900--Sobic002G233700 Sobic002G401800 Sobic002G401800 Sobic004G012900--Sobic002G401800 Sobic010G005500 Sobic010G005500 Sobic004G012900--Sobic010G005500 Sobic004G012900--Sobic003G378600 Sobic009G059300 Sobic009G059300 Sobic004G012900--Sobic009G059300 Sobic010G277600 Sobic010G277600 Sobic004G012900--Sobic010G277600 Sobic003G387100 Sobic003G387100 Sobic004G012900--Sobic003G387100 Sobic008G171300 Sobic008G171300 Sobic004G012900--Sobic008G171300 Sobic006G110900--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic006G110900--Sobic001G286600 Sobic006G110900--Sobic006G155500 Sobic006G110900--Sobic006G214700 Sobic006G110900--Sobic008G063200 Sobic006G110900--Sobic001G118400 Sobic004G224500 Sobic004G224500 Sobic006G110900--Sobic004G224500 Sobic003G328100 Sobic003G328100 Sobic006G110900--Sobic003G328100 Sobic006G110900--Sobic006G050400
Octagon: transcription factors


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