Gene annotation
Transcriptome id Sobic.004G025400.1
Synonym CDS4, Sb04g002260
Functional annotation phosphatidate cytidylyltransferase, putative, expressed
UniProt A0A1Z5RKK4
Pfam PF01148
Panther DB PTHR13773 PTHR13773:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45150 : cytidinediphosphate diacylglycerol synthase 4
RAP-DB (Rice) LOC_Os02g03460.1 : phosphatidate cytidylyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a034966 , Zm00025a018809
Brachypodium KQJ93079
Barley HORVU6Hr1G014790.6 , HORVU6Hr1G014790.5 , HORVU6Hr1G014790.4 , HORVU6Hr1G014790.7 , HORVU6Hr1G014790.1 , HORVU6Hr1G014790.3 , HORVU6Hr1G014790.2
Wheat TraesCS6A02G088800 , TraesCS6B02G111200 , TraesCSU02G017500
Populus -


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cDNA sequences
Sobic.004G025400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.009G028400 expressed protein -
3 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
4 Sobic.001G455500 pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.001G283700 acyltransferase, putative, expressed K00630: glycerol-3-phosphate O-acyltransferase
6 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
7 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
8 Sobic.004G253400 tic20 protein-related, putative, expressed -
9 Sobic.004G179200 expressed protein -
10 Sobic.003G334100 zinc finger family protein, putative, expressed -
11 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
12 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
13 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
14 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
15 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
16 Sobic.006G214700 APO, putative, expressed -
17 Sobic.002G331800 PPR repeat containing protein, expressed -
18 Sobic.004G333400 COBW domain containing protein, putative, expressed -
19 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
20 Sobic.008G089500 Fe-S metabolism associated domain containing protein, expressed K03517: quinolinate synthase


Gene co-expression network
sample Sobic004G025400 Sobic004G025400 Sobic001G006000 Sobic001G006000 Sobic004G025400--Sobic001G006000 Sobic009G028400 Sobic009G028400 Sobic004G025400--Sobic009G028400 Sobic005G028900 Sobic005G028900 Sobic004G025400--Sobic005G028900 Sobic001G455500 Sobic001G455500 Sobic004G025400--Sobic001G455500 Sobic001G283700 Sobic001G283700 Sobic004G025400--Sobic001G283700 Sobic003G221700 Sobic003G221700 Sobic004G025400--Sobic003G221700 Sobic003G439600 Sobic003G439600 Sobic004G025400--Sobic003G439600 Sobic004G253400 Sobic004G253400 Sobic004G025400--Sobic004G253400 Sobic004G179200 Sobic004G179200 Sobic004G025400--Sobic004G179200 Sobic010G076800 Sobic010G076800 Sobic001G006000--Sobic010G076800 Sobic001G006000--Sobic009G028400 Sobic001G006000--Sobic004G253400 Sobic008G063200 Sobic008G063200 Sobic001G006000--Sobic008G063200 Sobic007G076900 Sobic007G076900 Sobic001G006000--Sobic007G076900 Sobic001G006000--Sobic004G179200 Sobic001G339100 Sobic001G339100 Sobic001G006000--Sobic001G339100 Sobic003G253300 Sobic003G253300 Sobic001G006000--Sobic003G253300 Sobic003G245800 Sobic003G245800 Sobic001G006000--Sobic003G245800 Sobic009G028400--Sobic001G006000 Sobic009G028400--Sobic001G339100 Sobic006G111600 Sobic006G111600 Sobic009G028400--Sobic006G111600 Sobic005G021600 Sobic005G021600 Sobic009G028400--Sobic005G021600 Sobic009G028400--Sobic003G221700 Sobic003G330100 Sobic003G330100 Sobic009G028400--Sobic003G330100 Sobic007G178500 Sobic007G178500 Sobic009G028400--Sobic007G178500 Sobic009G028400--Sobic004G179200 Sobic003G310100 Sobic003G310100 Sobic009G028400--Sobic003G310100 Sobic006G214700 Sobic006G214700 Sobic005G028900--Sobic006G214700 Sobic004G144000 Sobic004G144000 Sobic005G028900--Sobic004G144000 Sobic010G183400 Sobic010G183400 Sobic005G028900--Sobic010G183400 Sobic004G250200 Sobic004G250200 Sobic005G028900--Sobic004G250200 Sobic005G028900--Sobic003G439600 Sobic005G028900--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic005G028900--Sobic003G179400 Sobic007G227600 Sobic007G227600 Sobic005G028900--Sobic007G227600 Sobic004G333400 Sobic004G333400 Sobic005G028900--Sobic004G333400 Sobic003G439000 Sobic003G439000 Sobic001G455500--Sobic003G439000 Sobic001G455500--Sobic004G179200 Sobic002G297400 Sobic002G297400 Sobic001G455500--Sobic002G297400 Sobic001G186200 Sobic001G186200 Sobic001G455500--Sobic001G186200 Sobic001G455500--Sobic001G006000 Sobic004G357300 Sobic004G357300 Sobic001G455500--Sobic004G357300 Sobic001G469900 Sobic001G469900 Sobic001G455500--Sobic001G469900 Sobic006G210400 Sobic006G210400 Sobic001G455500--Sobic006G210400 Sobic001G001300 Sobic001G001300 Sobic001G455500--Sobic001G001300 Sobic006G106400 Sobic006G106400 Sobic001G283700--Sobic006G106400 Sobic009G175500 Sobic009G175500 Sobic001G283700--Sobic009G175500 Sobic001G126300 Sobic001G126300 Sobic001G283700--Sobic001G126300 Sobic001G283700--Sobic004G333400 Sobic004G012900 Sobic004G012900 Sobic001G283700--Sobic004G012900 Sobic001G128600 Sobic001G128600 Sobic001G283700--Sobic001G128600 Sobic004G165000 Sobic004G165000 Sobic001G283700--Sobic004G165000 Sobic002G112400 Sobic002G112400 Sobic001G283700--Sobic002G112400 Sobic005G110400 Sobic005G110400 Sobic001G283700--Sobic005G110400 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic003G221700--Sobic002G131700 Sobic003G221700--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic003G221700--Sobic009G234200 Sobic008G072300 Sobic008G072300 Sobic003G221700--Sobic008G072300 Sobic003G439600--Sobic003G245800 Sobic003G439600--Sobic010G183400 Sobic002G331800 Sobic002G331800 Sobic003G439600--Sobic002G331800 Sobic003G439600--Sobic006G214700 Sobic003G439600--Sobic005G028900 Sobic002G163700 Sobic002G163700 Sobic003G439600--Sobic002G163700 Sobic006G197700 Sobic006G197700 Sobic003G439600--Sobic006G197700 Sobic001G450600 Sobic001G450600 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic004G253400--Sobic001G006000 Sobic001G175700 Sobic001G175700 Sobic004G253400--Sobic001G175700 Sobic006G125000 Sobic006G125000 Sobic004G253400--Sobic006G125000 Sobic003G342200 Sobic003G342200 Sobic004G253400--Sobic003G342200 Sobic004G253400--Sobic003G253300 Sobic003G378600 Sobic003G378600 Sobic004G253400--Sobic003G378600 Sobic004G253400--Sobic004G179200 Sobic004G253400--Sobic004G012900 Sobic006G110900 Sobic006G110900 Sobic004G253400--Sobic006G110900 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic004G179200--Sobic002G297400 Sobic001G469933 Sobic001G469933 Sobic004G179200--Sobic001G469933 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100
Octagon: transcription factors


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