Gene annotation
Transcriptome id Sobic.003G334100.1
Synonym Sb03g037900, VAR3
Functional annotation zinc finger family protein, putative, expressed
UniProt C5XN72
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G17790 : zinc finger (Ran-binding) family protein
RAP-DB (Rice) LOC_Os01g59980.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a027106 , Zm00025a039794
Brachypodium KQK10302 , KQK10301
Barley HORVU3Hr1G080150.7 , HORVU3Hr1G080150.6 , HORVU3Hr1G080150.5 , HORVU3Hr1G080150.4 , HORVU3Hr1G080150.3 , HORVU3Hr1G080150.2 , HORVU3Hr1G080150.1
Wheat TraesCS3D02G332700 , TraesCS3B02G370800 , TraesCS3A02G339100 , TraesCS3B02G370800 , TraesCS3B02G370800
Populus -


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cDNA sequences
Sobic.003G334100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G333400 COBW domain containing protein, putative, expressed -
2 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
3 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
4 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
5 Sobic.002G331800 PPR repeat containing protein, expressed -
6 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
7 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
8 Sobic.004G144000 - -
9 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
10 Sobic.006G280800 expressed protein -
11 Sobic.006G214700 APO, putative, expressed -
12 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
13 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
14 Sobic.004G179200 expressed protein -
15 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
16 Sobic.008G089500 Fe-S metabolism associated domain containing protein, expressed K03517: quinolinate synthase
17 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
18 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
19 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
20 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G334100 Sobic003G334100 Sobic004G333400 Sobic004G333400 Sobic003G334100--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic003G334100--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic003G334100--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic003G334100--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic003G334100--Sobic002G331800 Sobic002G181000 Sobic002G181000 Sobic003G334100--Sobic002G181000 Sobic009G052700 Sobic009G052700 Sobic003G334100--Sobic009G052700 Sobic004G144000 Sobic004G144000 Sobic003G334100--Sobic004G144000 Sobic009G234200 Sobic009G234200 Sobic003G334100--Sobic009G234200 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic010G183400--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic003G245800 Sobic003G245800 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic003G330100 Sobic003G330100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic003G439600 Sobic003G439600 Sobic010G183400--Sobic003G439600 Sobic005G028900 Sobic005G028900 Sobic010G183400--Sobic005G028900 Sobic003G084500--Sobic004G333400 Sobic003G084500--Sobic003G334100 Sobic003G084500--Sobic001G450600 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic006G214700 Sobic006G214700 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic008G063200 Sobic008G063200 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic001G450600--Sobic003G286300 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic010G076800 Sobic010G076800 Sobic002G331800--Sobic010G076800 Sobic002G331800--Sobic006G214700 Sobic002G331800--Sobic003G439600 Sobic002G331800--Sobic004G333400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic002G331800--Sobic003G245800 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic009G052700--Sobic003G334100 Sobic009G052700--Sobic006G214700 Sobic004G248400 Sobic004G248400 Sobic009G052700--Sobic004G248400 Sobic010G211500 Sobic010G211500 Sobic009G052700--Sobic010G211500 Sobic009G052700--Sobic005G028900 Sobic003G179400 Sobic003G179400 Sobic009G052700--Sobic003G179400 Sobic005G138600 Sobic005G138600 Sobic009G052700--Sobic005G138600 Sobic009G014100 Sobic009G014100 Sobic009G052700--Sobic009G014100 Sobic009G052700--Sobic004G333400 Sobic004G144000--Sobic005G028900 Sobic004G144000--Sobic003G334100 Sobic004G144000--Sobic004G250200 Sobic004G144000--Sobic004G333400 Sobic004G144000--Sobic010G183400 Sobic004G144000--Sobic003G084500 Sobic004G144000--Sobic003G444500 Sobic004G144000--Sobic002G181000 Sobic004G265900 Sobic004G265900 Sobic004G144000--Sobic004G265900 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic006G204100 Sobic006G204100 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200
Octagon: transcription factors


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