Gene annotation
Transcriptome id Sobic.003G439600.1
Synonym Sb03g046940
Functional annotation amino acid kinase, putative, expressed
UniProt C5XJ97
Pfam PF00696
Panther DB PTHR21499 PTHR21499:SF23
NCBI CDD -
KEGG Orthology K09903; uridylate kinase
Gene Ontology GO:0009041; uridylate kinase activity GO:0006221pyrimidine nucleotide biosynthetic process


Orthologs (automatic annotation)
TAIR AT3G18680 : Amino acid kinase family protein
RAP-DB (Rice) LOC_Os01g73450.1 : amino acid kinase, putative, expressed
MaizeGDB (Corn) Zm00025a039065 , Zm00025a025874
Brachypodium PNT73652 , KQK11694 , KQK11695
Barley HORVU3Hr1G112590.2 , HORVU3Hr1G112590.4 , HORVU3Hr1G112590.1 , HORVU3Hr1G112590.7 , HORVU3Hr1G112590.6 , HORVU3Hr1G112590.8 , HORVU3Hr1G112590.5 , HORVU3Hr1G112590.3
Wheat TraesCS3A02G513500 , TraesCS3A02G513500 , TraesCS3D02G522000 , TraesCS3B02G581900 , TraesCS3B02G581900
Populus PNT35120


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cDNA sequences
Sobic.003G439600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
2 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
3 Sobic.002G331800 PPR repeat containing protein, expressed -
4 Sobic.006G214700 APO, putative, expressed -
5 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
6 Sobic.002G163700 expressed protein -
7 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
8 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
9 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
10 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
11 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
12 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
13 Sobic.005G138600 - -
14 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
15 Sobic.002G250100 dehydrogenase, putative, expressed -
16 Sobic.004G333400 COBW domain containing protein, putative, expressed -
17 Sobic.008G063200 expressed protein -
18 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
19 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
20 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -


Gene co-expression network
sample Sobic003G439600 Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic003G439600--Sobic003G245800 Sobic010G183400 Sobic010G183400 Sobic003G439600--Sobic010G183400 Sobic002G331800 Sobic002G331800 Sobic003G439600--Sobic002G331800 Sobic006G214700 Sobic006G214700 Sobic003G439600--Sobic006G214700 Sobic005G028900 Sobic005G028900 Sobic003G439600--Sobic005G028900 Sobic002G163700 Sobic002G163700 Sobic003G439600--Sobic002G163700 Sobic006G197700 Sobic006G197700 Sobic003G439600--Sobic006G197700 Sobic001G450600 Sobic001G450600 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic003G245800--Sobic006G197700 Sobic002G345200 Sobic002G345200 Sobic003G245800--Sobic002G345200 Sobic004G250200 Sobic004G250200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G221700 Sobic003G221700 Sobic003G245800--Sobic003G221700 Sobic009G234200 Sobic009G234200 Sobic003G245800--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic003G245800--Sobic003G330100 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic004G333400 Sobic004G333400 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic003G334100 Sobic003G334100 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic010G076800 Sobic010G076800 Sobic002G331800--Sobic010G076800 Sobic002G331800--Sobic006G214700 Sobic002G331800--Sobic003G439600 Sobic002G331800--Sobic004G333400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic002G331800--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic008G063200 Sobic008G063200 Sobic006G214700--Sobic008G063200 Sobic006G214700--Sobic010G076800 Sobic005G028900--Sobic006G214700 Sobic004G144000 Sobic004G144000 Sobic005G028900--Sobic004G144000 Sobic005G028900--Sobic010G183400 Sobic005G028900--Sobic004G250200 Sobic005G028900--Sobic003G439600 Sobic005G028900--Sobic003G245800 Sobic005G028900--Sobic003G179400 Sobic007G227600 Sobic007G227600 Sobic005G028900--Sobic007G227600 Sobic005G028900--Sobic004G333400 Sobic002G163700--Sobic003G439600 Sobic002G163700--Sobic001G450600 Sobic002G163700--Sobic007G227600 Sobic002G163700--Sobic006G214700 Sobic002G163700--Sobic002G250100 Sobic002G163700--Sobic006G197700 Sobic002G386400 Sobic002G386400 Sobic002G163700--Sobic002G386400 Sobic002G038300 Sobic002G038300 Sobic002G163700--Sobic002G038300 Sobic002G163700--Sobic003G245800 Sobic006G197700--Sobic003G245800 Sobic006G197700--Sobic002G345200 Sobic006G111600 Sobic006G111600 Sobic006G197700--Sobic006G111600 Sobic007G132500 Sobic007G132500 Sobic006G197700--Sobic007G132500 Sobic006G197700--Sobic003G439600 Sobic006G197700--Sobic003G330100 Sobic006G197700--Sobic003G221700 Sobic006G197700--Sobic002G386400 Sobic006G197700--Sobic002G163700 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic001G450600--Sobic003G286300 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic003G286300--Sobic001G450600 Sobic003G286300--Sobic003G084500 Sobic003G286300--Sobic009G234200 Sobic003G286300--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic003G286300--Sobic003G444500 Sobic004G179200 Sobic004G179200 Sobic003G286300--Sobic004G179200 Sobic002G297400 Sobic002G297400 Sobic003G286300--Sobic002G297400 Sobic003G286300--Sobic003G439600 Sobic003G286300--Sobic003G330100
Octagon: transcription factors


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