Gene annotation
Transcriptome id Sobic.005G138600.1
Synonym Sb05g020300
Functional annotation -
UniProt C5Y3R0
Pfam PF03461 PF02559 PF00271 PF00270
Panther DB PTHR14025 PTHR14025:SF21
NCBI CDD KOG0344; ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0005524ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G02060 : DEAD/DEAH box helicase, putative
RAP-DB (Rice) LOC_Os11g32880.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a049309 , Zm00025a015700
Brachypodium KQJ88341 , KQJ88340 , KQJ88336 , KQJ88337 , KQJ88338 , KQJ88339
Barley HORVU4Hr1G040140.16 , HORVU4Hr1G040140.15 , HORVU4Hr1G040140.13 , HORVU4Hr1G040140.12 , HORVU4Hr1G040140.10 , HORVU4Hr1G040140.18 , HORVU4Hr1G040140.9 , HORVU4Hr1G040140.8 , HORVU4Hr1G040140.6 , HORVU4Hr1G040140.5 , HORVU4Hr1G040140.4 , HORVU4Hr1G040140.3 , HORVU4Hr1G040140.1 , HORVU4Hr1G040140.17 , HORVU4Hr1G040140.14
Wheat TraesCS4D02G158000 , TraesCS4B02G160800 , TraesCS4B02G160800 , TraesCS4B02G160800 , TraesCS4A02G165200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
2 Sobic.002G331800 PPR repeat containing protein, expressed -
3 Sobic.002G354600 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
4 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
5 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
6 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
7 Sobic.006G214700 APO, putative, expressed -
8 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
9 Sobic.001G071200 - -
10 Sobic.009G014100 OsFBX178 - F-box domain containing protein, expressed -
11 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
12 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
13 Sobic.003G125900 DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed K02470: DNA gyrase subunit B
14 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
15 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
16 Sobic.002G163700 expressed protein -
17 Sobic.004G089200 ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.002G250100 dehydrogenase, putative, expressed -
19 Sobic.006G193200 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic005G138600 Sobic005G138600 Sobic010G197000 Sobic010G197000 Sobic005G138600--Sobic010G197000 Sobic002G331800 Sobic002G331800 Sobic005G138600--Sobic002G331800 Sobic002G354600 Sobic002G354600 Sobic005G138600--Sobic002G354600 Sobic003G439600 Sobic003G439600 Sobic005G138600--Sobic003G439600 Sobic010G211500 Sobic010G211500 Sobic005G138600--Sobic010G211500 Sobic009G052700 Sobic009G052700 Sobic005G138600--Sobic009G052700 Sobic006G214700 Sobic006G214700 Sobic005G138600--Sobic006G214700 Sobic003G245800 Sobic003G245800 Sobic005G138600--Sobic003G245800 Sobic001G071200 Sobic001G071200 Sobic005G138600--Sobic001G071200 Sobic009G014100 Sobic009G014100 Sobic010G197000--Sobic009G014100 Sobic010G197000--Sobic002G354600 Sobic010G197000--Sobic005G138600 Sobic004G300000 Sobic004G300000 Sobic010G197000--Sobic004G300000 Sobic010G109600 Sobic010G109600 Sobic010G197000--Sobic010G109600 Sobic003G190000 Sobic003G190000 Sobic010G197000--Sobic003G190000 Sobic010G197000--Sobic002G331800 Sobic010G197000--Sobic006G214700 Sobic008G172300 Sobic008G172300 Sobic010G197000--Sobic008G172300 Sobic010G076800 Sobic010G076800 Sobic002G331800--Sobic010G076800 Sobic002G331800--Sobic006G214700 Sobic002G331800--Sobic003G439600 Sobic004G333400 Sobic004G333400 Sobic002G331800--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic001G450600 Sobic001G450600 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic002G331800--Sobic003G245800 Sobic002G354600--Sobic010G197000 Sobic002G354600--Sobic004G300000 Sobic002G354600--Sobic005G138600 Sobic002G354600--Sobic009G014100 Sobic002G025700 Sobic002G025700 Sobic002G354600--Sobic002G025700 Sobic010G035500 Sobic010G035500 Sobic002G354600--Sobic010G035500 Sobic003G108900 Sobic003G108900 Sobic002G354600--Sobic003G108900 Sobic002G354600--Sobic002G331800 Sobic004G298900 Sobic004G298900 Sobic002G354600--Sobic004G298900 Sobic003G439600--Sobic003G245800 Sobic003G439600--Sobic010G183400 Sobic003G439600--Sobic002G331800 Sobic003G439600--Sobic006G214700 Sobic005G028900 Sobic005G028900 Sobic003G439600--Sobic005G028900 Sobic002G163700 Sobic002G163700 Sobic003G439600--Sobic002G163700 Sobic006G197700 Sobic006G197700 Sobic003G439600--Sobic006G197700 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic007G227600 Sobic007G227600 Sobic010G211500--Sobic007G227600 Sobic009G036300 Sobic009G036300 Sobic010G211500--Sobic009G036300 Sobic001G207200 Sobic001G207200 Sobic010G211500--Sobic001G207200 Sobic010G211500--Sobic009G052700 Sobic003G084500 Sobic003G084500 Sobic010G211500--Sobic003G084500 Sobic010G211500--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic010G211500--Sobic003G334100 Sobic010G211500--Sobic010G183400 Sobic010G074100 Sobic010G074100 Sobic010G211500--Sobic010G074100 Sobic009G052700--Sobic003G334100 Sobic009G052700--Sobic006G214700 Sobic004G248400 Sobic004G248400 Sobic009G052700--Sobic004G248400 Sobic009G052700--Sobic010G211500 Sobic009G052700--Sobic005G028900 Sobic003G179400 Sobic003G179400 Sobic009G052700--Sobic003G179400 Sobic009G052700--Sobic005G138600 Sobic009G052700--Sobic009G014100 Sobic009G052700--Sobic004G333400 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic008G063200 Sobic008G063200 Sobic006G214700--Sobic008G063200 Sobic006G214700--Sobic010G076800 Sobic003G245800--Sobic006G197700 Sobic002G345200 Sobic002G345200 Sobic003G245800--Sobic002G345200 Sobic004G250200 Sobic004G250200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G221700 Sobic003G221700 Sobic003G245800--Sobic003G221700 Sobic009G234200 Sobic009G234200 Sobic003G245800--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic003G245800--Sobic003G330100 Sobic004G268500 Sobic004G268500 Sobic001G071200--Sobic004G268500 Sobic001G071200--Sobic005G138600 Sobic001G071200--Sobic002G331800 Sobic001G071200--Sobic010G076800 Sobic003G284800 Sobic003G284800 Sobic001G071200--Sobic003G284800 Sobic001G071200--Sobic002G354600 Sobic001G071200--Sobic006G214700 Sobic001G071200--Sobic002G025700 Sobic001G071200--Sobic003G253300
Octagon: transcription factors


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