Gene annotation
Transcriptome id Sobic.003G125900.1
Synonym GYRB2, Sb03g010630
Functional annotation DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed
UniProt C5XGL0
Pfam PF01751 PF02518 PF00986 PF00204
Panther DB PTHR10169 PTHR10169:SF35
NCBI CDD -
KEGG Orthology K02470; DNA gyrase subunit B
Gene Ontology GO:0006265; DNA topological change GO:0005524ATP binding GO:0003918DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G04130 : DNA GYRASE B2
RAP-DB (Rice) LOC_Os01g16290.1 : DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a024103
Brachypodium KQK03824
Barley HORVU3Hr1G038050.9 , HORVU3Hr1G038050.8 , HORVU3Hr1G038050.1 , HORVU3Hr1G038050.11 , HORVU3Hr1G038050.3 , HORVU3Hr1G038050.2 , HORVU3Hr1G038050.5 , HORVU3Hr1G038050.4 , HORVU3Hr1G038050.7 , HORVU3Hr1G038050.6 , HORVU3Hr1G038050.19 , HORVU3Hr1G038050.18 , HORVU3Hr1G038050.15 , HORVU3Hr1G038050.14 , HORVU3Hr1G038050.17 , HORVU3Hr1G038050.16 , HORVU3Hr1G038050.10 , HORVU3Hr1G038050.13 , HORVU3Hr1G038050.12
Wheat TraesCS3D02G188800 , TraesCS3A02G184800 , TraesCS3B02G214600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G331800 PPR repeat containing protein, expressed -
2 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
3 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
4 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
5 Sobic.001G060500 YT521-B, putative, expressed -
6 Sobic.001G118400 expressed protein -
7 Sobic.004G252500 OsProtIV1 - Putative Protease IV homologue@ Domain 2 is a SPH, expressed K04773: protease IV
8 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
10 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
11 Sobic.008G006100 MATE efflux protein, putative, expressed -
12 Sobic.006G280800 expressed protein -
13 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.002G073200 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
15 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
16 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
17 Sobic.010G110400 - -
18 Sobic.003G306600 acetamidase, putative, expressed K01455: formamidase
19 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
20 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -


Gene co-expression network
sample Sobic003G125900 Sobic003G125900 Sobic002G331800 Sobic002G331800 Sobic003G125900--Sobic002G331800 Sobic004G179400 Sobic004G179400 Sobic003G125900--Sobic004G179400 Sobic003G070900 Sobic003G070900 Sobic003G125900--Sobic003G070900 Sobic003G094350 Sobic003G094350 Sobic003G125900--Sobic003G094350 Sobic001G060500 Sobic001G060500 Sobic003G125900--Sobic001G060500 Sobic001G118400 Sobic001G118400 Sobic003G125900--Sobic001G118400 Sobic004G252500 Sobic004G252500 Sobic003G125900--Sobic004G252500 Sobic002G028400 Sobic002G028400 Sobic003G125900--Sobic002G028400 Sobic001G500600 Sobic001G500600 Sobic003G125900--Sobic001G500600 Sobic010G076800 Sobic010G076800 Sobic002G331800--Sobic010G076800 Sobic006G214700 Sobic006G214700 Sobic002G331800--Sobic006G214700 Sobic003G439600 Sobic003G439600 Sobic002G331800--Sobic003G439600 Sobic004G333400 Sobic004G333400 Sobic002G331800--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic002G331800--Sobic010G183400 Sobic002G331800--Sobic001G118400 Sobic001G450600 Sobic001G450600 Sobic002G331800--Sobic001G450600 Sobic002G331800--Sobic003G125900 Sobic003G245800 Sobic003G245800 Sobic002G331800--Sobic003G245800 Sobic001G540600 Sobic001G540600 Sobic004G179400--Sobic001G540600 Sobic004G179400--Sobic001G060500 Sobic009G207900 Sobic009G207900 Sobic004G179400--Sobic009G207900 Sobic004G179400--Sobic002G028400 Sobic008G074000 Sobic008G074000 Sobic004G179400--Sobic008G074000 Sobic004G179400--Sobic003G125900 Sobic001G378100 Sobic001G378100 Sobic004G179400--Sobic001G378100 Sobic009G170200 Sobic009G170200 Sobic004G179400--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic004G179400--Sobic001G504400 Sobic002G133900 Sobic002G133900 Sobic003G070900--Sobic002G133900 Sobic003G287900 Sobic003G287900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G070900--Sobic003G094350 Sobic003G070900--Sobic001G118400 Sobic003G070900--Sobic001G500600 Sobic004G353100 Sobic004G353100 Sobic003G070900--Sobic004G353100 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic003G094350--Sobic002G028400 Sobic004G336200 Sobic004G336200 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic003G094350--Sobic004G353100 Sobic006G233700 Sobic006G233700 Sobic001G060500--Sobic006G233700 Sobic001G060500--Sobic004G179400 Sobic002G073200 Sobic002G073200 Sobic001G060500--Sobic002G073200 Sobic003G190000 Sobic003G190000 Sobic001G060500--Sobic003G190000 Sobic003G203300 Sobic003G203300 Sobic001G060500--Sobic003G203300 Sobic002G173100 Sobic002G173100 Sobic001G060500--Sobic002G173100 Sobic010G110400 Sobic010G110400 Sobic001G060500--Sobic010G110400 Sobic001G060500--Sobic003G125900 Sobic003G108900 Sobic003G108900 Sobic001G060500--Sobic003G108900 Sobic006G155500 Sobic006G155500 Sobic001G118400--Sobic006G155500 Sobic001G118400--Sobic003G070900 Sobic003G328100 Sobic003G328100 Sobic001G118400--Sobic003G328100 Sobic004G165900 Sobic004G165900 Sobic001G118400--Sobic004G165900 Sobic001G286600 Sobic001G286600 Sobic001G118400--Sobic001G286600 Sobic002G061900 Sobic002G061900 Sobic001G118400--Sobic002G061900 Sobic010G056300 Sobic010G056300 Sobic001G118400--Sobic010G056300 Sobic001G118400--Sobic004G252500 Sobic006G140700 Sobic006G140700 Sobic001G118400--Sobic006G140700 Sobic004G252500--Sobic004G165900 Sobic004G252500--Sobic003G108900 Sobic004G252500--Sobic001G118400 Sobic004G300100 Sobic004G300100 Sobic004G252500--Sobic004G300100 Sobic010G231500 Sobic010G231500 Sobic004G252500--Sobic010G231500 Sobic006G025400 Sobic006G025400 Sobic004G252500--Sobic006G025400 Sobic004G252500--Sobic003G070900 Sobic009G004100 Sobic009G004100 Sobic004G252500--Sobic009G004100 Sobic004G252500--Sobic003G125900 Sobic002G028400--Sobic002G133900 Sobic002G028400--Sobic003G094350 Sobic002G028400--Sobic001G500600 Sobic002G028400--Sobic003G070900 Sobic002G028400--Sobic009G170200 Sobic002G028400--Sobic008G074000 Sobic002G028400--Sobic001G540600 Sobic002G028400--Sobic003G287900 Sobic007G103400 Sobic007G103400 Sobic002G028400--Sobic007G103400 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic001G500600--Sobic003G287900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900
Octagon: transcription factors


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